Top 10 genes with highest correlation to Rv0088/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1362c/- | (cc=0.5806) | info on Rv1362c/- |
| Rv3157/nuoM | (cc=0.5689) | info on Rv3157/nuoM |
| Rv2500c/fadE19 | (cc=0.5156) | info on Rv2500c/fadE19 |
| Rv0055/rpsR1 | (cc=0.5105) | info on Rv0055/rpsR1 |
| Rv3759c/proX | (cc=0.5037) | info on Rv3759c/proX |
| Rv2275/- | (cc=0.5002) | info on Rv2275/- |
| Rv2584c/apt | (cc=0.483) | info on Rv2584c/apt |
| Rv3166c/- | (cc=0.4817) | info on Rv3166c/- |
| Rv3529c/- | (cc=0.4772) | info on Rv3529c/- |
| Rv2185c/TB16.3 | (cc=0.4684) | info on Rv2185c/TB16.3 |
Correlation of Rv0088/- with Rv2500c/fadE19
Normalized LFCs for Rv0088/-:
(description and provenance of datasets)
| Rv0088/- | Rv2500c/fadE19 | |
| Fe_supp_jason_reseq | -0.898 | 0.0 |
| low_pH_jason_reseq | 1.047 | -0.668 |
| NO_jason_reseq | 0.315 | 0.601 |
| B6_jason_reseq | -0.739 | 0.0 |
| MHCII_jason_reseq | 0.06 | -0.05 |
| Isoniazid02 | -0.319 | 0.201 |
| Rifampicin4 | 0.295 | -0.2 |
| Ethambutol3 | 0.347 | 0.0 |
| Meropenem3 | 0.407 | -0.28 |
| Vancomycin16 | 0.289 | 0.186 |
| Rv2680_day32 | 0.593 | 0.228 |
| H37Rv_KO_MarP | 0.0 | -0.556 |
| hypoxia_3wks | 0.371 | -0.566 |
| hypoxia_6wks | 0.0 | 0.436 |
| glycerol | 0.0 | 0.813 |
| cholesterol | 0.585 | 0.246 |
| AJ | 0.845 | -0.65 |
| Bibs02 | -0.109 | -0.666 |
| Bibs02c | -0.887 | -0.587 |
| BL6 | 0.601 | 2.178 |
| BL6a | 1.435 | 1.969 |
| BXD01 | 0.475 | 1.805 |
| BXD010 | 0.238 | 1.178 |
| BXD011 | 1.112 | 3.308 |
| BXD03 | 1.264 | 1.136 |
| BXD04 | 1.213 | 1.169 |
| BXD05 | 1.304 | 1.599 |
| BXD06 | 1.339 | 1.295 |
| BXD07 | 1.243 | 1.309 |
| BXD08 | 0.842 | 1.499 |
| BXD09 | 1.394 | 1.67 |
| CAST | -0.21 | -0.467 |
| CCcont | 1.187 | 0.988 |
| DS01 | -0.291 | 0.522 |
| DS02 | -0.922 | -0.285 |
| DS04 | -0.51 | -0.394 |
| DS0c | 0.063 | 1.435 |
| GP01 | -1.051 | -0.2 |
| GP02 | -0.102 | -0.303 |
| GP0c | 0.474 | 0.077 |
| NOD | -0.351 | 1.695 |
| NZO | 0.767 | 0.118 |
| PWK | 0.632 | -0.124 |
| H37Rv_KO_CtpC | -1.865 | 0.359 |
| H37Rv_KO_CtpD | 0.899 | 2.791 |
| H37Rv_KO_Rv1272 | 1.903 | 1.261 |
| H37Rv_KO_SugABC | 1.099 | 0.984 |
| H37Rv_KO_MbtN | -1.097 | 0.175 |
| Trans05 | 0.928 | 1.628 |
| macrophage_unactivated | 0.66 | 0.953 |
| IL1 | 1.124 | 0.647 |
| Rapamycin | 0.144 | 0.203 |
| Tcell | -0.052 | 0.417 |
| GMCSF | -0.217 | -0.372 |
| IFNab | 0.834 | 0.387 |
| IFNg | -0.131 | -0.184 |
| IFNg_GMCSF1 | -0.368 | 0.305 |
| Rv1432_day32 | 0.0 | -0.833 |
| Rv1565c_day32 | -0.725 | -1.797 |
| secA2_input | -0.939 | 0.266 |
| delta_Rv3594 | -0.566 | 0.35 |
| delta_Rv3717 | -1.033 | -0.586 |
| delta_Rv3811 | -0.449 | -0.907 |
| delta_Rv0954 | -0.941 | 0.183 |
| PonA1 | -1.708 | -0.386 |
| EccD1_KO | 0.635 | 1.151 |
| EspI_KO | 0.0 | 0.485 |
| PE35_KO | 0.817 | 0.767 |
| PPE68_KO | 1.945 | 1.299 |
| glycerol2 | 1.274 | -0.82 |
| lignocerate | 0.418 | -0.605 |
| oleate | 0.601 | 0.829 |
| phosphatidylcholine | 0.594 | -0.27 |
| acetate | 0.748 | -0.826 |
| glucAc | 0.172 | -0.348 |
| Rv0950ko | -1.879 | -1.224 |
| Rv1096ko | -1.33 | -0.253 |
| Rv3684ko | -0.91 | -0.468 |
| delta_otsA_trehalose | 0.152 | 1.461 |