Top 10 genes with highest correlation to Rv0084/hycD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2306B/- | (cc=0.5535) | info on Rv2306B/- |
| Rv0609/vapC28 | (cc=0.527) | info on Rv0609/vapC28 |
| Rv2813/- | (cc=0.5249) | info on Rv2813/- |
| Rv2288/- | (cc=0.5239) | info on Rv2288/- |
| Rv1208/gpgS | (cc=0.5218) | info on Rv1208/gpgS |
| Rv1941/- | (cc=0.5166) | info on Rv1941/- |
| Rv1359/- | (cc=0.5042) | info on Rv1359/- |
| Rv1136/- | (cc=0.5026) | info on Rv1136/- |
| Rv1441c/PE_PGRS26 | (cc=0.4991) | info on Rv1441c/PE_PGRS26 |
| Rv2426c/- | (cc=0.4972) | info on Rv2426c/- |
Correlation of Rv0084/hycD with Rv1359/-
Normalized LFCs for Rv0084/hycD:
(description and provenance of datasets)
| Rv0084/hycD | Rv1359/- | |
| Fe_supp_jason_reseq | -1.171 | 0.384 |
| low_pH_jason_reseq | 0.432 | 2.212 |
| NO_jason_reseq | -1.024 | 0.0 |
| B6_jason_reseq | -0.769 | 0.399 |
| MHCII_jason_reseq | -1.214 | 0.72 |
| Isoniazid02 | 0.058 | 1.11 |
| Rifampicin4 | 0.601 | -0.119 |
| Ethambutol3 | -0.05 | -0.226 |
| Meropenem3 | -0.435 | 0.96 |
| Vancomycin16 | 0.544 | 0.114 |
| Rv2680_day32 | -1.581 | 0.45 |
| H37Rv_KO_MarP | 0.356 | 0.214 |
| hypoxia_3wks | -0.77 | -0.068 |
| hypoxia_6wks | -0.804 | 0.071 |
| glycerol | 1.167 | 0.995 |
| cholesterol | 0.132 | 0.541 |
| AJ | 0.054 | 0.025 |
| Bibs02 | -1.005 | -0.172 |
| Bibs02c | 0.767 | 0.446 |
| BL6 | -0.045 | 0.333 |
| BL6a | -0.595 | 0.109 |
| BXD01 | -1.074 | 0.085 |
| BXD010 | -0.469 | 0.684 |
| BXD011 | -0.305 | 0.697 |
| BXD03 | -0.344 | 0.25 |
| BXD04 | -0.632 | 0.194 |
| BXD05 | -0.342 | 0.7 |
| BXD06 | -0.133 | 0.0 |
| BXD07 | 0.228 | 0.357 |
| BXD08 | -0.814 | 0.169 |
| BXD09 | -0.491 | 0.164 |
| CAST | -1.176 | 0.382 |
| CCcont | 0.087 | 0.593 |
| DS01 | -0.115 | 0.18 |
| DS02 | -0.274 | 0.381 |
| DS04 | 0.415 | -1.065 |
| DS0c | -0.245 | 0.253 |
| GP01 | -2.056 | -0.13 |
| GP02 | -1.663 | -1.53 |
| GP0c | -1.292 | -1.181 |
| NOD | -1.575 | -0.324 |
| NZO | 0.202 | -0.116 |
| PWK | 0.8 | 0.229 |
| H37Rv_KO_CtpC | -0.413 | 0.106 |
| H37Rv_KO_CtpD | -1.516 | -1.185 |
| H37Rv_KO_Rv1272 | 0.049 | 0.613 |
| H37Rv_KO_SugABC | -1.262 | -1.28 |
| H37Rv_KO_MbtN | -1.771 | -0.806 |
| Trans05 | -1.614 | 0.381 |
| macrophage_unactivated | -1.076 | -0.189 |
| IL1 | -0.392 | -0.442 |
| Rapamycin | 0.942 | 0.448 |
| Tcell | -0.958 | -0.443 |
| GMCSF | 0.916 | -0.063 |
| IFNab | -0.079 | -0.411 |
| IFNg | -0.353 | -0.195 |
| IFNg_GMCSF1 | -0.641 | 0.217 |
| Rv1432_day32 | -0.353 | 0.241 |
| Rv1565c_day32 | -1.494 | 0.494 |
| secA2_input | -0.742 | -1.246 |
| delta_Rv3594 | -0.895 | 0.226 |
| delta_Rv3717 | -0.405 | -0.336 |
| delta_Rv3811 | 0.842 | -0.101 |
| delta_Rv0954 | -1.905 | 0.242 |
| PonA1 | -1.27 | 0.906 |
| EccD1_KO | 1.595 | -0.164 |
| EspI_KO | 1.184 | 0.271 |
| PE35_KO | 2.917 | 1.633 |
| PPE68_KO | 3.2 | 1.574 |
| glycerol2 | 0.311 | 0.918 |
| lignocerate | 1.581 | 1.774 |
| oleate | -1.791 | -0.33 |
| phosphatidylcholine | 0.517 | 1.221 |
| acetate | 1.807 | 2.146 |
| glucAc | 1.618 | 1.854 |
| Rv0950ko | -0.88 | -0.093 |
| Rv1096ko | 0.121 | -0.287 |
| Rv3684ko | -0.203 | 0.432 |
| delta_otsA_trehalose | -0.843 | 2.024 |