Top 10 genes with highest correlation to Rv0084/hycD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2306B/- | (cc=0.5535) | info on Rv2306B/- |
| Rv0609/vapC28 | (cc=0.527) | info on Rv0609/vapC28 |
| Rv2813/- | (cc=0.5249) | info on Rv2813/- |
| Rv2288/- | (cc=0.5239) | info on Rv2288/- |
| Rv1208/gpgS | (cc=0.5218) | info on Rv1208/gpgS |
| Rv1941/- | (cc=0.5166) | info on Rv1941/- |
| Rv1359/- | (cc=0.5042) | info on Rv1359/- |
| Rv1136/- | (cc=0.5026) | info on Rv1136/- |
| Rv1441c/PE_PGRS26 | (cc=0.4991) | info on Rv1441c/PE_PGRS26 |
| Rv2426c/- | (cc=0.4972) | info on Rv2426c/- |
Correlation of Rv0084/hycD with Rv1136/-
Normalized LFCs for Rv0084/hycD:
(description and provenance of datasets)
| Rv0084/hycD | Rv1136/- | |
| Fe_supp_jason_reseq | -1.171 | -1.075 |
| low_pH_jason_reseq | 0.432 | -0.873 |
| NO_jason_reseq | -1.024 | -1.076 |
| B6_jason_reseq | -0.769 | 0.28 |
| MHCII_jason_reseq | -1.214 | 0.933 |
| Isoniazid02 | 0.058 | 1.455 |
| Rifampicin4 | 0.601 | 0.195 |
| Ethambutol3 | -0.05 | 1.571 |
| Meropenem3 | -0.435 | 0.42 |
| Vancomycin16 | 0.544 | 0.3 |
| Rv2680_day32 | -1.581 | -0.795 |
| H37Rv_KO_MarP | 0.356 | -0.412 |
| hypoxia_3wks | -0.77 | -0.275 |
| hypoxia_6wks | -0.804 | 1.524 |
| glycerol | 1.167 | 1.031 |
| cholesterol | 0.132 | 0.625 |
| AJ | 0.054 | -0.232 |
| Bibs02 | -1.005 | -0.521 |
| Bibs02c | 0.767 | 0.212 |
| BL6 | -0.045 | 0.237 |
| BL6a | -0.595 | -0.759 |
| BXD01 | -1.074 | 0.194 |
| BXD010 | -0.469 | 0.533 |
| BXD011 | -0.305 | -1.067 |
| BXD03 | -0.344 | 0.25 |
| BXD04 | -0.632 | -1.103 |
| BXD05 | -0.342 | 1.569 |
| BXD06 | -0.133 | 0.266 |
| BXD07 | 0.228 | 0.387 |
| BXD08 | -0.814 | -0.241 |
| BXD09 | -0.491 | -0.095 |
| CAST | -1.176 | -0.729 |
| CCcont | 0.087 | 0.369 |
| DS01 | -0.115 | 0.926 |
| DS02 | -0.274 | -0.066 |
| DS04 | 0.415 | 0.101 |
| DS0c | -0.245 | -0.985 |
| GP01 | -2.056 | 0.023 |
| GP02 | -1.663 | -0.284 |
| GP0c | -1.292 | -1.272 |
| NOD | -1.575 | -2.73 |
| NZO | 0.202 | 0.397 |
| PWK | 0.8 | -1.04 |
| H37Rv_KO_CtpC | -0.413 | -0.83 |
| H37Rv_KO_CtpD | -1.516 | -2.482 |
| H37Rv_KO_Rv1272 | 0.049 | -0.72 |
| H37Rv_KO_SugABC | -1.262 | -2.201 |
| H37Rv_KO_MbtN | -1.771 | -1.98 |
| Trans05 | -1.614 | -2.13 |
| macrophage_unactivated | -1.076 | -0.183 |
| IL1 | -0.392 | -0.581 |
| Rapamycin | 0.942 | -0.522 |
| Tcell | -0.958 | 1.597 |
| GMCSF | 0.916 | 1.761 |
| IFNab | -0.079 | 0.269 |
| IFNg | -0.353 | 1.331 |
| IFNg_GMCSF1 | -0.641 | -1.185 |
| Rv1432_day32 | -0.353 | -0.18 |
| Rv1565c_day32 | -1.494 | 0.556 |
| secA2_input | -0.742 | 1.049 |
| delta_Rv3594 | -0.895 | 1.655 |
| delta_Rv3717 | -0.405 | 2.103 |
| delta_Rv3811 | 0.842 | 1.358 |
| delta_Rv0954 | -1.905 | 1.368 |
| PonA1 | -1.27 | 0.107 |
| EccD1_KO | 1.595 | 0.467 |
| EspI_KO | 1.184 | 2.481 |
| PE35_KO | 2.917 | 1.986 |
| PPE68_KO | 3.2 | 1.6 |
| glycerol2 | 0.311 | 0.569 |
| lignocerate | 1.581 | 1.627 |
| oleate | -1.791 | -1.94 |
| phosphatidylcholine | 0.517 | 1.087 |
| acetate | 1.807 | 1.491 |
| glucAc | 1.618 | 1.359 |
| Rv0950ko | -0.88 | 1.423 |
| Rv1096ko | 0.121 | 1.686 |
| Rv3684ko | -0.203 | 0.295 |
| delta_otsA_trehalose | -0.843 | 0.122 |