Top 10 genes with highest correlation to Rv0084/hycD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2306B/- | (cc=0.5535) | info on Rv2306B/- |
| Rv0609/vapC28 | (cc=0.527) | info on Rv0609/vapC28 |
| Rv2813/- | (cc=0.5249) | info on Rv2813/- |
| Rv2288/- | (cc=0.5239) | info on Rv2288/- |
| Rv1208/gpgS | (cc=0.5218) | info on Rv1208/gpgS |
| Rv1941/- | (cc=0.5166) | info on Rv1941/- |
| Rv1359/- | (cc=0.5042) | info on Rv1359/- |
| Rv1136/- | (cc=0.5026) | info on Rv1136/- |
| Rv1441c/PE_PGRS26 | (cc=0.4991) | info on Rv1441c/PE_PGRS26 |
| Rv2426c/- | (cc=0.4972) | info on Rv2426c/- |
Correlation of Rv0084/hycD with Rv2306B/-
Normalized LFCs for Rv0084/hycD:
(description and provenance of datasets)
| Rv0084/hycD | Rv2306B/- | |
| Fe_supp_jason_reseq | -1.171 | 1.468 |
| low_pH_jason_reseq | 0.432 | -0.656 |
| NO_jason_reseq | -1.024 | 0.344 |
| B6_jason_reseq | -0.769 | 1.389 |
| MHCII_jason_reseq | -1.214 | 0.455 |
| Isoniazid02 | 0.058 | 0.604 |
| Rifampicin4 | 0.601 | 0.699 |
| Ethambutol3 | -0.05 | 0.226 |
| Meropenem3 | -0.435 | 0.131 |
| Vancomycin16 | 0.544 | 1.318 |
| Rv2680_day32 | -1.581 | 0.267 |
| H37Rv_KO_MarP | 0.356 | 0.023 |
| hypoxia_3wks | -0.77 | 0.638 |
| hypoxia_6wks | -0.804 | 1.28 |
| glycerol | 1.167 | -0.554 |
| cholesterol | 0.132 | -0.643 |
| AJ | 0.054 | 0.091 |
| Bibs02 | -1.005 | -1.763 |
| Bibs02c | 0.767 | 0.499 |
| BL6 | -0.045 | -0.53 |
| BL6a | -0.595 | -0.613 |
| BXD01 | -1.074 | -0.978 |
| BXD010 | -0.469 | -1.821 |
| BXD011 | -0.305 | -1.145 |
| BXD03 | -0.344 | -0.395 |
| BXD04 | -0.632 | -0.683 |
| BXD05 | -0.342 | -2.755 |
| BXD06 | -0.133 | -0.737 |
| BXD07 | 0.228 | -0.332 |
| BXD08 | -0.814 | -0.796 |
| BXD09 | -0.491 | -0.29 |
| CAST | -1.176 | -0.127 |
| CCcont | 0.087 | -0.021 |
| DS01 | -0.115 | 0.686 |
| DS02 | -0.274 | -0.246 |
| DS04 | 0.415 | -0.566 |
| DS0c | -0.245 | 0.841 |
| GP01 | -2.056 | -1.931 |
| GP02 | -1.663 | -1.275 |
| GP0c | -1.292 | -1.254 |
| NOD | -1.575 | -1.045 |
| NZO | 0.202 | -1.611 |
| PWK | 0.8 | 0.053 |
| H37Rv_KO_CtpC | -0.413 | -1.623 |
| H37Rv_KO_CtpD | -1.516 | -2.477 |
| H37Rv_KO_Rv1272 | 0.049 | -2.246 |
| H37Rv_KO_SugABC | -1.262 | 1.092 |
| H37Rv_KO_MbtN | -1.771 | -0.641 |
| Trans05 | -1.614 | -0.813 |
| macrophage_unactivated | -1.076 | 2.301 |
| IL1 | -0.392 | -1.308 |
| Rapamycin | 0.942 | -0.626 |
| Tcell | -0.958 | -1.111 |
| GMCSF | 0.916 | -1.595 |
| IFNab | -0.079 | -0.484 |
| IFNg | -0.353 | 1.211 |
| IFNg_GMCSF1 | -0.641 | 0.233 |
| Rv1432_day32 | -0.353 | 0.0 |
| Rv1565c_day32 | -1.494 | 0.716 |
| secA2_input | -0.742 | -0.235 |
| delta_Rv3594 | -0.895 | -1.037 |
| delta_Rv3717 | -0.405 | -0.96 |
| delta_Rv3811 | 0.842 | -0.947 |
| delta_Rv0954 | -1.905 | -2.222 |
| PonA1 | -1.27 | -4.022 |
| EccD1_KO | 1.595 | 3.111 |
| EspI_KO | 1.184 | 2.618 |
| PE35_KO | 2.917 | 4.623 |
| PPE68_KO | 3.2 | 5.238 |
| glycerol2 | 0.311 | -1.003 |
| lignocerate | 1.581 | 0.972 |
| oleate | -1.791 | -1.509 |
| phosphatidylcholine | 0.517 | 0.0 |
| acetate | 1.807 | 2.803 |
| glucAc | 1.618 | 1.681 |
| Rv0950ko | -0.88 | -0.407 |
| Rv1096ko | 0.121 | -0.48 |
| Rv3684ko | -0.203 | 2.256 |
| delta_otsA_trehalose | -0.843 | 0.739 |