Top 10 genes with highest correlation to Rv0071/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3612c/- | (cc=0.6207) | info on Rv3612c/- |
| Rv2651c/- | (cc=0.5984) | info on Rv2651c/- |
| Rv0237/lpqI | (cc=0.5977) | info on Rv0237/lpqI |
| Rv3450c/eccB4 | (cc=0.5688) | info on Rv3450c/eccB4 |
| Rv0918/- | (cc=0.5683) | info on Rv0918/- |
| Rv1181/pks4 | (cc=0.5651) | info on Rv1181/pks4 |
| Rv1184c/- | (cc=0.5614) | info on Rv1184c/- |
| Rv2636/- | (cc=0.5337) | info on Rv2636/- |
| Rv0856/- | (cc=0.5323) | info on Rv0856/- |
| Rv0601c/- | (cc=0.5215) | info on Rv0601c/- |
Correlation of Rv0071/- with Rv0237/lpqI
Normalized LFCs for Rv0071/-:
(description and provenance of datasets)
| Rv0071/- | Rv0237/lpqI | |
| Fe_supp_jason_reseq | 0.624 | 0.87 |
| low_pH_jason_reseq | -0.139 | 1.166 |
| NO_jason_reseq | 0.517 | -3.187 |
| B6_jason_reseq | 1.764 | -0.303 |
| MHCII_jason_reseq | 1.675 | 1.499 |
| Isoniazid02 | 0.073 | -0.34 |
| Rifampicin4 | 0.75 | 1.026 |
| Ethambutol3 | 1.131 | 0.461 |
| Meropenem3 | 0.694 | 0.138 |
| Vancomycin16 | 0.218 | -0.775 |
| Rv2680_day32 | 1.537 | 1.358 |
| H37Rv_KO_MarP | 0.059 | -0.265 |
| hypoxia_3wks | -0.152 | 0.295 |
| hypoxia_6wks | -0.182 | 0.155 |
| glycerol | 1.16 | -0.923 |
| cholesterol | 1.207 | -0.019 |
| AJ | -0.504 | 0.15 |
| Bibs02 | 0.474 | 0.162 |
| Bibs02c | 0.887 | 0.703 |
| BL6 | 0.441 | -0.796 |
| BL6a | -0.265 | 0.27 |
| BXD01 | -0.919 | -0.287 |
| BXD010 | -0.781 | -1.54 |
| BXD011 | -0.745 | -0.388 |
| BXD03 | -1.044 | -1.806 |
| BXD04 | -0.664 | -0.816 |
| BXD05 | -0.091 | -1.41 |
| BXD06 | -0.636 | -1.135 |
| BXD07 | -0.722 | -0.985 |
| BXD08 | -0.8 | -0.782 |
| BXD09 | -0.69 | -1.075 |
| CAST | 0.235 | -0.432 |
| CCcont | -0.342 | -0.123 |
| DS01 | 0.301 | -0.195 |
| DS02 | 0.767 | 0.37 |
| DS04 | 0.51 | -2.032 |
| DS0c | -0.093 | 1.265 |
| GP01 | -2.601 | -1.147 |
| GP02 | -2.703 | -1.569 |
| GP0c | -1.661 | -0.995 |
| NOD | 1.694 | 1.642 |
| NZO | 0.027 | -1.884 |
| PWK | 0.443 | 0.026 |
| H37Rv_KO_CtpC | 0.0 | -0.385 |
| H37Rv_KO_CtpD | 0.247 | -0.934 |
| H37Rv_KO_Rv1272 | -0.757 | -0.797 |
| H37Rv_KO_SugABC | -0.655 | 0.191 |
| H37Rv_KO_MbtN | -0.546 | -1.283 |
| Trans05 | -0.911 | -0.681 |
| macrophage_unactivated | 0.085 | 0.271 |
| IL1 | 0.181 | -0.869 |
| Rapamycin | 0.779 | 0.089 |
| Tcell | -0.088 | -0.196 |
| GMCSF | 0.671 | 0.576 |
| IFNab | -0.366 | 0.088 |
| IFNg | -0.171 | -0.16 |
| IFNg_GMCSF1 | 0.776 | 0.27 |
| Rv1432_day32 | 0.426 | 0.0 |
| Rv1565c_day32 | 1.978 | 0.867 |
| secA2_input | 1.85 | 1.702 |
| delta_Rv3594 | -0.136 | -0.477 |
| delta_Rv3717 | -0.409 | -0.311 |
| delta_Rv3811 | -0.201 | -0.165 |
| delta_Rv0954 | 0.828 | 1.053 |
| PonA1 | 0.177 | 0.665 |
| EccD1_KO | -1.727 | -1.829 |
| EspI_KO | -1.931 | -1.985 |
| PE35_KO | -1.248 | -1.916 |
| PPE68_KO | -1.017 | -2.582 |
| glycerol2 | 0.422 | -0.219 |
| lignocerate | 0.559 | -0.712 |
| oleate | -0.903 | -0.583 |
| phosphatidylcholine | 0.172 | -0.359 |
| acetate | 0.321 | 0.271 |
| glucAc | 0.587 | -0.026 |
| Rv0950ko | 0.066 | 0.175 |
| Rv1096ko | 0.709 | -0.323 |
| Rv3684ko | -0.072 | -0.508 |
| delta_otsA_trehalose | 1.156 | 0.388 |