TnSeqCorr

Top 10 genes with highest correlation to Rv0061c/-:

update plotcorrelationlink to info on gene
Rv2631/- (cc=0.5636) info on Rv2631/-
Rv3354/- (cc=0.5387) info on Rv3354/-
Rv2636/- (cc=0.5365) info on Rv2636/-
Rv1367c/- (cc=0.517) info on Rv1367c/-
Rv1250/- (cc=0.5106) info on Rv1250/-
Rv1999c/- (cc=0.5044) info on Rv1999c/-
Rv2032/acg (cc=0.4962) info on Rv2032/acg
Rv1708/- (cc=0.4926) info on Rv1708/-
Rv0840c/pip (cc=0.4887) info on Rv0840c/pip
Rv0089/- (cc=0.4845) info on Rv0089/-

Correlation of Rv0061c/- with Rv0089/-

Normalized LFCs for Rv0061c/-:
(description and provenance of datasets)
Rv0061c/-Rv0089/-
Fe_supp_jason_reseq

-0.827

-0.617

low_pH_jason_reseq

0.09

-0.221

NO_jason_reseq

-0.89

0.047

B6_jason_reseq

0.974

0.241

MHCII_jason_reseq

0.728

0.487

Isoniazid02

0.096

0.877

Rifampicin4

0.59

-0.701

Ethambutol3

-0.264

-0.483

Meropenem3

0.079

-0.564

Vancomycin16

0.175

0.0

Rv2680_day32

0.882

1.554

H37Rv_KO_MarP

0.769

1.943

hypoxia_3wks

0.052

-0.59

hypoxia_6wks

-0.171

-0.699

glycerol

-1.258

-1.188

cholesterol

-0.425

-0.61

AJ

-1.756

0.069

Bibs02

0.038

0.098

Bibs02c

-0.514

0.0

BL6

-1.953

-1.724

BL6a

-0.595

-1.411

BXD01

-0.876

-1.681

BXD010

-0.602

-1.478

BXD011

-1.819

-1.727

BXD03

-3.298

-1.397

BXD04

-1.33

-0.973

BXD05

-2.2

-1.529

BXD06

-2.022

-1.642

BXD07

-2.669

-2.006

BXD08

0.135

-2.382

BXD09

-1.533

-1.596

CAST

-0.489

0.492

CCcont

-0.805

-0.977

DS01

-0.051

-0.209

DS02

0.599

0.153

DS04

-0.15

0.462

DS0c

0.057

0.308

GP01

-0.726

0.326

GP02

-1.692

-1.336

GP0c

-1.38

-0.489

NOD

-0.161

0.145

NZO

-0.747

-0.1

PWK

-0.467

0.389

H37Rv_KO_CtpC

-2.741

-1.138

H37Rv_KO_CtpD

-3.022

-3.064

H37Rv_KO_Rv1272

-0.934

-0.742

H37Rv_KO_SugABC

-1.279

-0.481

H37Rv_KO_MbtN

-2.135

-1.571

Trans05

1.568

0.008

macrophage_unactivated

0.215

-2.727

IL1

-1.608

-1.246

Rapamycin

-1.743

-2.071

Tcell

-0.352

-1.3

GMCSF

-0.594

-1.848

IFNab

-2.769

-2.524

IFNg

-1.518

-1.871

IFNg_GMCSF1

0.053

-0.936

Rv1432_day32

0.505

0.301

Rv1565c_day32

-0.602

0.594

secA2_input

0.199

-1.028

delta_Rv3594

-2.894

0.0

delta_Rv3717

-0.741

-0.216

delta_Rv3811

-1.553

0.755

delta_Rv0954

-0.163

0.442

PonA1

-3.804

-0.308

EccD1_KO

-0.062

-0.118

EspI_KO

0.314

1.221

PE35_KO

0.983

0.204

PPE68_KO

0.406

1.497

glycerol2

-0.099

1.494

lignocerate

-0.235

1.736

oleate

-0.781

-0.505

phosphatidylcholine

-0.581

1.304

acetate

-0.047

2.168

glucAc

0.07

1.508

Rv0950ko

-0.479

-0.169

Rv1096ko

-1.264

0.983

Rv3684ko

-1.32

1.019

delta_otsA_trehalose

-1.007

1.304