TnSeqCorr

Top 10 genes with highest correlation to Rv0017c/rodA:

update plotcorrelationlink to info on gene
Rv0016c/pbpA (cc=0.8416) info on Rv0016c/pbpA
Rv3630/- (cc=0.6746) info on Rv3630/-
Rv2004c/- (cc=0.6604) info on Rv2004c/-
Rv2190c/- (cc=0.6412) info on Rv2190c/-
Rv1836c/- (cc=0.6403) info on Rv1836c/-
Rv1821/secA2 (cc=0.6302) info on Rv1821/secA2
Rv0050/ponA1 (cc=0.6279) info on Rv0050/ponA1
Rv0989c/grcC2 (cc=0.6156) info on Rv0989c/grcC2
Rv0820/phoT (cc=0.6061) info on Rv0820/phoT
Rv1566c/- (cc=0.6002) info on Rv1566c/-

Correlation of Rv0017c/rodA with Rv0016c/pbpA

Normalized LFCs for Rv0017c/rodA:
(description and provenance of datasets)
Rv0017c/rodARv0016c/pbpA
Fe_supp_jason_reseq

2.392

0.98

low_pH_jason_reseq

2.923

-0.192

NO_jason_reseq

-0.281

-0.302

B6_jason_reseq

0.0

-0.421

MHCII_jason_reseq

0.503

0.0

Isoniazid02

-1.005

0.0

Rifampicin4

-2.32

-0.753

Ethambutol3

-2.802

-1.837

Meropenem3

-1.846

-1.495

Vancomycin16

-4.6

-1.653

Rv2680_day32

1.168

-0.429

H37Rv_KO_MarP

-4.322

-3.2

hypoxia_3wks

0.447

0.638

hypoxia_6wks

0.656

1.161

glycerol

1.891

1.549

cholesterol

1.357

0.773

AJ

-0.866

-0.212

Bibs02

1.507

1.686

Bibs02c

0.488

0.174

BL6

0.805

0.731

BL6a

0.769

0.462

BXD01

1.247

0.626

BXD010

-0.141

0.299

BXD011

0.54

0.0

BXD03

0.424

0.0

BXD04

0.236

0.524

BXD05

0.903

0.915

BXD06

0.254

0.401

BXD07

0.323

0.416

BXD08

0.653

0.639

BXD09

0.14

0.226

CAST

-0.39

0.37

CCcont

2.042

1.206

DS01

0.83

0.197

DS02

-0.117

0.35

DS04

0.822

0.707

DS0c

0.217

0.0

GP01

1.006

0.979

GP02

-0.194

0.194

GP0c

1.008

1.289

NOD

-0.524

0.0

NZO

-1.246

-0.38

PWK

-1.225

-0.374

H37Rv_KO_CtpC

0.571

0.592

H37Rv_KO_CtpD

1.363

1.56

H37Rv_KO_Rv1272

0.824

0.424

H37Rv_KO_SugABC

0.453

0.627

H37Rv_KO_MbtN

0.943

0.376

Trans05

0.642

0.0

macrophage_unactivated

0.385

0.246

IL1

-0.679

0.231

Rapamycin

-1.363

-0.807

Tcell

0.398

0.0

GMCSF

-1.658

-0.449

IFNab

-0.13

0.236

IFNg

-1.344

0.0

IFNg_GMCSF1

0.258

0.698

Rv1432_day32

2.066

0.763

Rv1565c_day32

0.0

0.0

secA2_input

-2.537

-1.061

delta_Rv3594

0.737

0.639

delta_Rv3717

0.369

-0.179

delta_Rv3811

1.068

0.666

delta_Rv0954

-2.989

-3.542

PonA1

-2.28

-2.49

EccD1_KO

-0.921

-0.977

EspI_KO

-0.847

-1.346

PE35_KO

0.505

1.187

PPE68_KO

0.349

0.41

glycerol2

-3.464

-2.276

lignocerate

-1.587

-1.707

oleate

-3.311

-1.988

phosphatidylcholine

-1.737

-2.274

acetate

-0.504

-0.756

glucAc

-0.083

-0.585

Rv0950ko

-1.716

-2.023

Rv1096ko

-1.007

-1.867

Rv3684ko

0.488

0.714

delta_otsA_trehalose

1.148

0.478