Top 10 genes with highest correlation to Rv0003/recF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2737c/recA | (cc=0.8067) | info on Rv2737c/recA |
| Rv1638/uvrA | (cc=0.7586) | info on Rv1638/uvrA |
| Rv2894c/xerC | (cc=0.7022) | info on Rv2894c/xerC |
| Rv1633/uvrB | (cc=0.6937) | info on Rv1633/uvrB |
| Rv3261/fbiA | (cc=0.6924) | info on Rv3261/fbiA |
| Rv3193c/- | (cc=0.6896) | info on Rv3193c/- |
| Rv2535c/pepQ | (cc=0.6827) | info on Rv2535c/pepQ |
| Rv2169c/- | (cc=0.672) | info on Rv2169c/- |
| Rv2362c/recO | (cc=0.6637) | info on Rv2362c/recO |
| Rv1010/ksgA | (cc=0.6505) | info on Rv1010/ksgA |
Correlation of Rv0003/recF with Rv2535c/pepQ
Normalized LFCs for Rv0003/recF:
(description and provenance of datasets)
| Rv0003/recF | Rv2535c/pepQ | |
| Fe_supp_jason_reseq | 2.382 | 1.68 |
| low_pH_jason_reseq | 0.0 | -0.231 |
| NO_jason_reseq | 0.281 | -0.362 |
| B6_jason_reseq | 0.333 | -0.153 |
| MHCII_jason_reseq | 0.0 | -0.135 |
| Isoniazid02 | 0.063 | -2.369 |
| Rifampicin4 | -1.086 | -1.7 |
| Ethambutol3 | -0.288 | -0.278 |
| Meropenem3 | -0.624 | -1.801 |
| Vancomycin16 | -0.913 | -2.032 |
| Rv2680_day32 | -0.554 | -0.359 |
| H37Rv_KO_MarP | -0.807 | 0.7 |
| hypoxia_3wks | -1.344 | -0.55 |
| hypoxia_6wks | -1.416 | -0.288 |
| glycerol | 1.24 | 0.353 |
| cholesterol | 1.099 | 2.735 |
| AJ | -0.168 | -0.232 |
| Bibs02 | -0.273 | -0.183 |
| Bibs02c | 0.0 | -0.209 |
| BL6 | 0.084 | -0.125 |
| BL6a | 0.696 | -0.198 |
| BXD01 | 0.322 | -0.13 |
| BXD010 | 0.0 | -0.128 |
| BXD011 | 0.383 | 0.0 |
| BXD03 | 0.475 | -0.135 |
| BXD04 | 0.305 | -0.124 |
| BXD05 | 0.176 | 0.0 |
| BXD06 | 0.469 | -0.133 |
| BXD07 | 0.796 | -0.138 |
| BXD08 | 0.174 | -0.133 |
| BXD09 | 0.494 | -0.14 |
| CAST | -0.344 | -0.23 |
| CCcont | 1.531 | 2.128 |
| DS01 | 0.159 | -0.236 |
| DS02 | 0.147 | -0.217 |
| DS04 | 0.37 | 0.177 |
| DS0c | 0.652 | -0.217 |
| GP01 | 0.68 | -0.099 |
| GP02 | -0.06 | -0.083 |
| GP0c | 1.112 | 0.227 |
| NOD | -0.163 | -0.225 |
| NZO | 0.134 | -0.199 |
| PWK | -0.142 | -0.196 |
| H37Rv_KO_CtpC | 0.401 | 0.284 |
| H37Rv_KO_CtpD | 0.778 | 0.791 |
| H37Rv_KO_Rv1272 | 0.185 | 0.246 |
| H37Rv_KO_SugABC | 1.183 | 0.808 |
| H37Rv_KO_MbtN | 0.069 | 0.841 |
| Trans05 | 0.249 | -0.131 |
| macrophage_unactivated | 0.701 | 1.48 |
| IL1 | -0.78 | -0.341 |
| Rapamycin | -0.807 | 0.0 |
| Tcell | -0.267 | 0.349 |
| GMCSF | 0.0 | 0.283 |
| IFNab | 0.877 | 0.623 |
| IFNg | 0.208 | -0.307 |
| IFNg_GMCSF1 | 0.478 | 0.0 |
| Rv1432_day32 | -1.005 | -1.207 |
| Rv1565c_day32 | -0.362 | -0.218 |
| secA2_input | -0.714 | 2.052 |
| delta_Rv3594 | 0.33 | 2.022 |
| delta_Rv3717 | -0.542 | 0.736 |
| delta_Rv3811 | 0.492 | 1.41 |
| delta_Rv0954 | 0.116 | 1.081 |
| PonA1 | -0.426 | -0.402 |
| EccD1_KO | 1.01 | 1.891 |
| EspI_KO | -0.108 | 2.119 |
| PE35_KO | 1.155 | 1.846 |
| PPE68_KO | 1.078 | 2.377 |
| glycerol2 | -2.152 | -4.566 |
| lignocerate | -2.157 | -2.986 |
| oleate | -2.178 | -6.0 |
| phosphatidylcholine | -2.053 | -2.654 |
| acetate | -0.775 | 0.128 |
| glucAc | -0.554 | 0.453 |
| Rv0950ko | 0.0 | -1.095 |
| Rv1096ko | 0.899 | 0.0 |
| Rv3684ko | 0.377 | 0.105 |
| delta_otsA_trehalose | -0.711 | 0.906 |