Top 10 genes with highest correlation to Rv0003/recF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2737c/recA | (cc=0.8067) | info on Rv2737c/recA |
| Rv1638/uvrA | (cc=0.7586) | info on Rv1638/uvrA |
| Rv2894c/xerC | (cc=0.7022) | info on Rv2894c/xerC |
| Rv1633/uvrB | (cc=0.6937) | info on Rv1633/uvrB |
| Rv3261/fbiA | (cc=0.6924) | info on Rv3261/fbiA |
| Rv3193c/- | (cc=0.6896) | info on Rv3193c/- |
| Rv2535c/pepQ | (cc=0.6827) | info on Rv2535c/pepQ |
| Rv2169c/- | (cc=0.672) | info on Rv2169c/- |
| Rv2362c/recO | (cc=0.6637) | info on Rv2362c/recO |
| Rv1010/ksgA | (cc=0.6505) | info on Rv1010/ksgA |
Correlation of Rv0003/recF with Rv1638/uvrA
Normalized LFCs for Rv0003/recF:
(description and provenance of datasets)
| Rv0003/recF | Rv1638/uvrA | |
| Fe_supp_jason_reseq | 2.382 | 2.005 |
| low_pH_jason_reseq | 0.0 | -0.842 |
| NO_jason_reseq | 0.281 | -0.874 |
| B6_jason_reseq | 0.333 | -1.019 |
| MHCII_jason_reseq | 0.0 | -1.251 |
| Isoniazid02 | 0.063 | -0.061 |
| Rifampicin4 | -1.086 | -1.11 |
| Ethambutol3 | -0.288 | 0.542 |
| Meropenem3 | -0.624 | -0.628 |
| Vancomycin16 | -0.913 | -0.764 |
| Rv2680_day32 | -0.554 | 0.0 |
| H37Rv_KO_MarP | -0.807 | -0.563 |
| hypoxia_3wks | -1.344 | -1.204 |
| hypoxia_6wks | -1.416 | -1.817 |
| glycerol | 1.24 | 1.654 |
| cholesterol | 1.099 | 0.773 |
| AJ | -0.168 | -0.242 |
| Bibs02 | -0.273 | -0.294 |
| Bibs02c | 0.0 | 0.382 |
| BL6 | 0.084 | 0.63 |
| BL6a | 0.696 | 0.997 |
| BXD01 | 0.322 | 0.486 |
| BXD010 | 0.0 | -0.206 |
| BXD011 | 0.383 | 0.475 |
| BXD03 | 0.475 | 0.189 |
| BXD04 | 0.305 | 0.372 |
| BXD05 | 0.176 | 0.3 |
| BXD06 | 0.469 | 0.498 |
| BXD07 | 0.796 | 0.194 |
| BXD08 | 0.174 | 0.297 |
| BXD09 | 0.494 | 0.572 |
| CAST | -0.344 | -0.809 |
| CCcont | 1.531 | 2.708 |
| DS01 | 0.159 | -0.12 |
| DS02 | 0.147 | 0.0 |
| DS04 | 0.37 | 0.094 |
| DS0c | 0.652 | 0.652 |
| GP01 | 0.68 | -0.28 |
| GP02 | -0.06 | 0.339 |
| GP0c | 1.112 | 0.942 |
| NOD | -0.163 | -1.126 |
| NZO | 0.134 | -0.701 |
| PWK | -0.142 | -0.433 |
| H37Rv_KO_CtpC | 0.401 | 1.331 |
| H37Rv_KO_CtpD | 0.778 | 0.558 |
| H37Rv_KO_Rv1272 | 0.185 | 0.71 |
| H37Rv_KO_SugABC | 1.183 | 1.472 |
| H37Rv_KO_MbtN | 0.069 | 1.713 |
| Trans05 | 0.249 | 0.344 |
| macrophage_unactivated | 0.701 | 1.382 |
| IL1 | -0.78 | -0.436 |
| Rapamycin | -0.807 | -0.295 |
| Tcell | -0.267 | 0.0 |
| GMCSF | 0.0 | -0.671 |
| IFNab | 0.877 | 0.771 |
| IFNg | 0.208 | -0.679 |
| IFNg_GMCSF1 | 0.478 | -0.625 |
| Rv1432_day32 | -1.005 | -1.562 |
| Rv1565c_day32 | -0.362 | -0.269 |
| secA2_input | -0.714 | 0.783 |
| delta_Rv3594 | 0.33 | 0.39 |
| delta_Rv3717 | -0.542 | -0.415 |
| delta_Rv3811 | 0.492 | 0.095 |
| delta_Rv0954 | 0.116 | 0.499 |
| PonA1 | -0.426 | -0.504 |
| EccD1_KO | 1.01 | 0.329 |
| EspI_KO | -0.108 | -0.128 |
| PE35_KO | 1.155 | 0.817 |
| PPE68_KO | 1.078 | 1.161 |
| glycerol2 | -2.152 | -1.562 |
| lignocerate | -2.157 | -1.816 |
| oleate | -2.178 | -1.904 |
| phosphatidylcholine | -2.053 | -2.088 |
| acetate | -0.775 | -0.143 |
| glucAc | -0.554 | 0.356 |
| Rv0950ko | 0.0 | -0.302 |
| Rv1096ko | 0.899 | -0.663 |
| Rv3684ko | 0.377 | -0.72 |
| delta_otsA_trehalose | -0.711 | 0.081 |