Top 10 genes with highest correlation to Rv0003/recF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2737c/recA | (cc=0.8067) | info on Rv2737c/recA |
| Rv1638/uvrA | (cc=0.7586) | info on Rv1638/uvrA |
| Rv2894c/xerC | (cc=0.7022) | info on Rv2894c/xerC |
| Rv1633/uvrB | (cc=0.6937) | info on Rv1633/uvrB |
| Rv3261/fbiA | (cc=0.6924) | info on Rv3261/fbiA |
| Rv3193c/- | (cc=0.6896) | info on Rv3193c/- |
| Rv2535c/pepQ | (cc=0.6827) | info on Rv2535c/pepQ |
| Rv2169c/- | (cc=0.672) | info on Rv2169c/- |
| Rv2362c/recO | (cc=0.6637) | info on Rv2362c/recO |
| Rv1010/ksgA | (cc=0.6505) | info on Rv1010/ksgA |
Correlation of Rv0003/recF with Rv1010/ksgA
Normalized LFCs for Rv0003/recF:
(description and provenance of datasets)
| Rv0003/recF | Rv1010/ksgA | |
| Fe_supp_jason_reseq | 2.382 | 1.796 |
| low_pH_jason_reseq | 0.0 | 0.0 |
| NO_jason_reseq | 0.281 | 0.362 |
| B6_jason_reseq | 0.333 | 0.0 |
| MHCII_jason_reseq | 0.0 | 0.0 |
| Isoniazid02 | 0.063 | -0.885 |
| Rifampicin4 | -1.086 | -2.708 |
| Ethambutol3 | -0.288 | 2.486 |
| Meropenem3 | -0.624 | -0.497 |
| Vancomycin16 | -0.913 | 0.95 |
| Rv2680_day32 | -0.554 | 0.0 |
| H37Rv_KO_MarP | -0.807 | 2.654 |
| hypoxia_3wks | -1.344 | -1.388 |
| hypoxia_6wks | -1.416 | -0.727 |
| glycerol | 1.24 | 0.992 |
| cholesterol | 1.099 | 1.558 |
| AJ | -0.168 | 0.0 |
| Bibs02 | -0.273 | 0.0 |
| Bibs02c | 0.0 | 0.399 |
| BL6 | 0.084 | 0.125 |
| BL6a | 0.696 | 0.198 |
| BXD01 | 0.322 | 0.13 |
| BXD010 | 0.0 | 0.0 |
| BXD011 | 0.383 | 0.243 |
| BXD03 | 0.475 | 0.573 |
| BXD04 | 0.305 | 0.124 |
| BXD05 | 0.176 | 0.135 |
| BXD06 | 0.469 | 0.469 |
| BXD07 | 0.796 | 0.264 |
| BXD08 | 0.174 | 0.253 |
| BXD09 | 0.494 | 0.14 |
| CAST | -0.344 | 0.0 |
| CCcont | 1.531 | 2.822 |
| DS01 | 0.159 | 0.236 |
| DS02 | 0.147 | 0.0 |
| DS04 | 0.37 | 0.194 |
| DS0c | 0.652 | 0.217 |
| GP01 | 0.68 | 0.0 |
| GP02 | -0.06 | 0.0 |
| GP0c | 1.112 | 0.0 |
| NOD | -0.163 | 0.0 |
| NZO | 0.134 | 0.0 |
| PWK | -0.142 | 0.0 |
| H37Rv_KO_CtpC | 0.401 | 0.162 |
| H37Rv_KO_CtpD | 0.778 | 0.445 |
| H37Rv_KO_Rv1272 | 0.185 | 0.387 |
| H37Rv_KO_SugABC | 1.183 | 0.55 |
| H37Rv_KO_MbtN | 0.069 | 0.747 |
| Trans05 | 0.249 | 0.249 |
| macrophage_unactivated | 0.701 | 0.83 |
| IL1 | -0.78 | 0.409 |
| Rapamycin | -0.807 | 0.0 |
| Tcell | -0.267 | 0.857 |
| GMCSF | 0.0 | 0.0 |
| IFNab | 0.877 | 0.417 |
| IFNg | 0.208 | 0.369 |
| IFNg_GMCSF1 | 0.478 | 0.0 |
| Rv1432_day32 | -1.005 | -0.18 |
| Rv1565c_day32 | -0.362 | 0.199 |
| secA2_input | -0.714 | -0.611 |
| delta_Rv3594 | 0.33 | -0.096 |
| delta_Rv3717 | -0.542 | -0.763 |
| delta_Rv3811 | 0.492 | -0.596 |
| delta_Rv0954 | 0.116 | -0.226 |
| PonA1 | -0.426 | 0.509 |
| EccD1_KO | 1.01 | -0.329 |
| EspI_KO | -0.108 | 0.633 |
| PE35_KO | 1.155 | 2.234 |
| PPE68_KO | 1.078 | 1.661 |
| glycerol2 | -2.152 | -2.36 |
| lignocerate | -2.157 | -2.642 |
| oleate | -2.178 | -2.704 |
| phosphatidylcholine | -2.053 | -2.846 |
| acetate | -0.775 | -0.818 |
| glucAc | -0.554 | -0.462 |
| Rv0950ko | 0.0 | -0.458 |
| Rv1096ko | 0.899 | -0.362 |
| Rv3684ko | 0.377 | -0.937 |
| delta_otsA_trehalose | -0.711 | 0.126 |