Top 10 genes with highest correlation to Rv0003/recF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2737c/recA | (cc=0.8067) | info on Rv2737c/recA |
| Rv1638/uvrA | (cc=0.7586) | info on Rv1638/uvrA |
| Rv2894c/xerC | (cc=0.7022) | info on Rv2894c/xerC |
| Rv1633/uvrB | (cc=0.6937) | info on Rv1633/uvrB |
| Rv3261/fbiA | (cc=0.6924) | info on Rv3261/fbiA |
| Rv3193c/- | (cc=0.6896) | info on Rv3193c/- |
| Rv2535c/pepQ | (cc=0.6827) | info on Rv2535c/pepQ |
| Rv2169c/- | (cc=0.672) | info on Rv2169c/- |
| Rv2362c/recO | (cc=0.6637) | info on Rv2362c/recO |
| Rv1010/ksgA | (cc=0.6505) | info on Rv1010/ksgA |
Correlation of Rv0003/recF with Rv2737c/recA
Normalized LFCs for Rv0003/recF:
(description and provenance of datasets)
| Rv0003/recF | Rv2737c/recA | |
| Fe_supp_jason_reseq | 2.382 | 3.01 |
| low_pH_jason_reseq | 0.0 | 0.768 |
| NO_jason_reseq | 0.281 | 0.446 |
| B6_jason_reseq | 0.333 | 0.0 |
| MHCII_jason_reseq | 0.0 | 0.166 |
| Isoniazid02 | 0.063 | 0.358 |
| Rifampicin4 | -1.086 | -0.563 |
| Ethambutol3 | -0.288 | 0.314 |
| Meropenem3 | -0.624 | -0.188 |
| Vancomycin16 | -0.913 | -1.141 |
| Rv2680_day32 | -0.554 | -0.588 |
| H37Rv_KO_MarP | -0.807 | -1.135 |
| hypoxia_3wks | -1.344 | -1.579 |
| hypoxia_6wks | -1.416 | -1.748 |
| glycerol | 1.24 | 2.478 |
| cholesterol | 1.099 | 1.44 |
| AJ | -0.168 | -0.471 |
| Bibs02 | -0.273 | -0.24 |
| Bibs02c | 0.0 | -0.424 |
| BL6 | 0.084 | 0.145 |
| BL6a | 0.696 | 0.438 |
| BXD01 | 0.322 | 0.077 |
| BXD010 | 0.0 | 0.345 |
| BXD011 | 0.383 | 0.711 |
| BXD03 | 0.475 | -0.177 |
| BXD04 | 0.305 | 0.391 |
| BXD05 | 0.176 | 0.297 |
| BXD06 | 0.469 | -0.084 |
| BXD07 | 0.796 | 0.437 |
| BXD08 | 0.174 | 0.225 |
| BXD09 | 0.494 | 0.566 |
| CAST | -0.344 | -0.145 |
| CCcont | 1.531 | 2.295 |
| DS01 | 0.159 | -0.149 |
| DS02 | 0.147 | 0.252 |
| DS04 | 0.37 | 0.0 |
| DS0c | 0.652 | -0.284 |
| GP01 | 0.68 | -0.449 |
| GP02 | -0.06 | 0.184 |
| GP0c | 1.112 | 0.22 |
| NOD | -0.163 | 0.905 |
| NZO | 0.134 | 0.338 |
| PWK | -0.142 | -0.398 |
| H37Rv_KO_CtpC | 0.401 | -0.213 |
| H37Rv_KO_CtpD | 0.778 | 0.878 |
| H37Rv_KO_Rv1272 | 0.185 | 0.568 |
| H37Rv_KO_SugABC | 1.183 | 1.288 |
| H37Rv_KO_MbtN | 0.069 | 0.576 |
| Trans05 | 0.249 | 0.906 |
| macrophage_unactivated | 0.701 | 0.0 |
| IL1 | -0.78 | -0.831 |
| Rapamycin | -0.807 | -0.555 |
| Tcell | -0.267 | 0.0 |
| GMCSF | 0.0 | 0.0 |
| IFNab | 0.877 | 0.922 |
| IFNg | 0.208 | -0.233 |
| IFNg_GMCSF1 | 0.478 | 0.503 |
| Rv1432_day32 | -1.005 | -0.301 |
| Rv1565c_day32 | -0.362 | -1.14 |
| secA2_input | -0.714 | -0.247 |
| delta_Rv3594 | 0.33 | 1.06 |
| delta_Rv3717 | -0.542 | -0.331 |
| delta_Rv3811 | 0.492 | 0.036 |
| delta_Rv0954 | 0.116 | 0.99 |
| PonA1 | -0.426 | -0.175 |
| EccD1_KO | 1.01 | 0.072 |
| EspI_KO | -0.108 | 0.188 |
| PE35_KO | 1.155 | 1.75 |
| PPE68_KO | 1.078 | 1.363 |
| glycerol2 | -2.152 | -1.883 |
| lignocerate | -2.157 | -1.506 |
| oleate | -2.178 | -1.905 |
| phosphatidylcholine | -2.053 | -1.661 |
| acetate | -0.775 | 0.274 |
| glucAc | -0.554 | -0.118 |
| Rv0950ko | 0.0 | -0.25 |
| Rv1096ko | 0.899 | -0.338 |
| Rv3684ko | 0.377 | 0.174 |
| delta_otsA_trehalose | -0.711 | 1.013 |