Top 10 genes with highest correlation to Rv3922c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0149/- | (cc=0.592) | info on Rv0149/- |
| Rv1633/uvrB | (cc=0.5692) | info on Rv1633/uvrB |
| Rv0184/- | (cc=0.5587) | info on Rv0184/- |
| Rv2922c/smc | (cc=0.5558) | info on Rv2922c/smc |
| Rv3050c/- | (cc=0.5438) | info on Rv3050c/- |
| Rv0822c/- | (cc=0.5346) | info on Rv0822c/- |
| Rv2179c/- | (cc=0.5317) | info on Rv2179c/- |
| Rv3218/- | (cc=0.517) | info on Rv3218/- |
| Rv1059/- | (cc=0.5134) | info on Rv1059/- |
| Rv0930/pstA1 | (cc=0.5125) | info on Rv0930/pstA1 |
Correlation of Rv3922c/- with Rv3050c/-
Normalized LFCs for Rv3922c/-:
(description and provenance of datasets)
| Rv3922c/- | Rv3050c/- | |
| Fe_supp_jason_reseq | 0.36 | -1.053 |
| low_pH_jason_reseq | 0.763 | 1.193 |
| NO_jason_reseq | 0.41 | 0.522 |
| B6_jason_reseq | -0.538 | -2.547 |
| MHCII_jason_reseq | -1.397 | -1.955 |
| Isoniazid02 | 0.0 | -0.063 |
| Rifampicin4 | -1.072 | -2.594 |
| Ethambutol3 | -0.146 | -0.612 |
| Meropenem3 | 3.541 | -0.918 |
| Vancomycin16 | -1.475 | -1.496 |
| Rv2680_day32 | -0.6 | 1.932 |
| H37Rv_KO_MarP | -0.501 | 0.906 |
| hypoxia_3wks | -0.961 | 1.611 |
| hypoxia_6wks | -1.462 | 2.7 |
| glycerol | 0.41 | 1.104 |
| cholesterol | -0.112 | -0.098 |
| AJ | 0.324 | 0.541 |
| Bibs02 | 1.519 | 0.115 |
| Bibs02c | -0.336 | 0.258 |
| BL6 | 2.447 | 2.934 |
| BL6a | 1.36 | 4.475 |
| BXD01 | 1.838 | 3.241 |
| BXD010 | 1.265 | 3.787 |
| BXD011 | 1.398 | 5.572 |
| BXD03 | 1.078 | 3.365 |
| BXD04 | 0.942 | 2.343 |
| BXD05 | 0.975 | 3.473 |
| BXD06 | 1.016 | 3.983 |
| BXD07 | 1.367 | 3.042 |
| BXD08 | 1.493 | 3.65 |
| BXD09 | 1.018 | 4.687 |
| CAST | 1.396 | -0.501 |
| CCcont | 1.43 | 2.452 |
| DS01 | 0.881 | -0.926 |
| DS02 | 0.304 | -0.852 |
| DS04 | 1.093 | 2.503 |
| DS0c | 1.315 | 0.616 |
| GP01 | 1.518 | 3.843 |
| GP02 | 0.432 | 1.738 |
| GP0c | 2.402 | 3.849 |
| NOD | 0.314 | -0.151 |
| NZO | 0.0 | -0.433 |
| PWK | 0.142 | -0.274 |
| H37Rv_KO_CtpC | 0.519 | 1.177 |
| H37Rv_KO_CtpD | 1.052 | 1.634 |
| H37Rv_KO_Rv1272 | -0.356 | 3.492 |
| H37Rv_KO_SugABC | 1.276 | 4.142 |
| H37Rv_KO_MbtN | 0.487 | 2.344 |
| Trans05 | 2.815 | 4.016 |
| macrophage_unactivated | 0.193 | 0.063 |
| IL1 | 0.525 | 0.291 |
| Rapamycin | -1.608 | 1.019 |
| Tcell | 1.404 | 2.255 |
| GMCSF | 1.912 | -0.573 |
| IFNab | 0.535 | 0.599 |
| IFNg | 0.759 | -1.227 |
| IFNg_GMCSF1 | 0.556 | -0.61 |
| Rv1432_day32 | 1.451 | 5.592 |
| Rv1565c_day32 | -0.49 | 0.458 |
| secA2_input | 0.916 | 0.321 |
| delta_Rv3594 | 0.815 | 1.42 |
| delta_Rv3717 | 0.413 | 3.259 |
| delta_Rv3811 | 0.045 | 0.932 |
| delta_Rv0954 | 0.391 | -1.765 |
| PonA1 | 0.54 | -1.855 |
| EccD1_KO | -0.743 | -2.072 |
| EspI_KO | 1.05 | -3.274 |
| PE35_KO | -1.257 | -1.613 |
| PPE68_KO | 0.0 | -1.261 |
| glycerol2 | -1.279 | -3.636 |
| lignocerate | -1.583 | -2.568 |
| oleate | -1.55 | -3.374 |
| phosphatidylcholine | -2.158 | -3.892 |
| acetate | -0.499 | -1.584 |
| glucAc | -0.944 | -0.723 |
| Rv0950ko | -0.286 | -0.874 |
| Rv1096ko | 1.134 | -1.384 |
| Rv3684ko | 0.478 | 1.952 |
| delta_otsA_trehalose | 0.739 | -0.519 |