Top 10 genes with highest correlation to Rv3922c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0149/- | (cc=0.592) | info on Rv0149/- |
| Rv1633/uvrB | (cc=0.5692) | info on Rv1633/uvrB |
| Rv0184/- | (cc=0.5587) | info on Rv0184/- |
| Rv2922c/smc | (cc=0.5558) | info on Rv2922c/smc |
| Rv3050c/- | (cc=0.5438) | info on Rv3050c/- |
| Rv0822c/- | (cc=0.5346) | info on Rv0822c/- |
| Rv2179c/- | (cc=0.5317) | info on Rv2179c/- |
| Rv3218/- | (cc=0.517) | info on Rv3218/- |
| Rv1059/- | (cc=0.5134) | info on Rv1059/- |
| Rv0930/pstA1 | (cc=0.5125) | info on Rv0930/pstA1 |
Correlation of Rv3922c/- with Rv1633/uvrB
Normalized LFCs for Rv3922c/-:
(description and provenance of datasets)
| Rv3922c/- | Rv1633/uvrB | |
| Fe_supp_jason_reseq | 0.36 | 2.98 |
| low_pH_jason_reseq | 0.763 | 0.507 |
| NO_jason_reseq | 0.41 | -0.517 |
| B6_jason_reseq | -0.538 | -1.215 |
| MHCII_jason_reseq | -1.397 | -0.73 |
| Isoniazid02 | 0.0 | -0.648 |
| Rifampicin4 | -1.072 | 0.022 |
| Ethambutol3 | -0.146 | 0.067 |
| Meropenem3 | 3.541 | -0.71 |
| Vancomycin16 | -1.475 | -1.326 |
| Rv2680_day32 | -0.6 | -0.518 |
| H37Rv_KO_MarP | -0.501 | -0.563 |
| hypoxia_3wks | -0.961 | -2.743 |
| hypoxia_6wks | -1.462 | -2.575 |
| glycerol | 0.41 | 1.565 |
| cholesterol | -0.112 | 0.932 |
| AJ | 0.324 | -0.124 |
| Bibs02 | 1.519 | 0.348 |
| Bibs02c | -0.336 | 0.958 |
| BL6 | 2.447 | 1.479 |
| BL6a | 1.36 | 2.274 |
| BXD01 | 1.838 | 1.401 |
| BXD010 | 1.265 | 1.514 |
| BXD011 | 1.398 | 2.168 |
| BXD03 | 1.078 | 1.77 |
| BXD04 | 0.942 | 1.523 |
| BXD05 | 0.975 | 1.762 |
| BXD06 | 1.016 | 1.844 |
| BXD07 | 1.367 | 1.792 |
| BXD08 | 1.493 | 1.572 |
| BXD09 | 1.018 | 1.902 |
| CAST | 1.396 | -0.692 |
| CCcont | 1.43 | 3.594 |
| DS01 | 0.881 | 0.12 |
| DS02 | 0.304 | 0.318 |
| DS04 | 1.093 | 0.888 |
| DS0c | 1.315 | 0.596 |
| GP01 | 1.518 | 1.062 |
| GP02 | 0.432 | 0.159 |
| GP0c | 2.402 | 2.173 |
| NOD | 0.314 | -1.199 |
| NZO | 0.0 | -0.897 |
| PWK | 0.142 | -0.732 |
| H37Rv_KO_CtpC | 0.519 | 2.151 |
| H37Rv_KO_CtpD | 1.052 | 2.17 |
| H37Rv_KO_Rv1272 | -0.356 | 2.201 |
| H37Rv_KO_SugABC | 1.276 | 1.396 |
| H37Rv_KO_MbtN | 0.487 | 3.197 |
| Trans05 | 2.815 | 1.691 |
| macrophage_unactivated | 0.193 | 0.792 |
| IL1 | 0.525 | -0.469 |
| Rapamycin | -1.608 | 0.15 |
| Tcell | 1.404 | 0.746 |
| GMCSF | 1.912 | 0.0 |
| IFNab | 0.535 | 1.817 |
| IFNg | 0.759 | 0.067 |
| IFNg_GMCSF1 | 0.556 | -0.408 |
| Rv1432_day32 | 1.451 | -0.617 |
| Rv1565c_day32 | -0.49 | -0.706 |
| secA2_input | 0.916 | 1.027 |
| delta_Rv3594 | 0.815 | 0.829 |
| delta_Rv3717 | 0.413 | 0.982 |
| delta_Rv3811 | 0.045 | 0.671 |
| delta_Rv0954 | 0.391 | 0.178 |
| PonA1 | 0.54 | -0.372 |
| EccD1_KO | -0.743 | -0.595 |
| EspI_KO | 1.05 | -0.248 |
| PE35_KO | -1.257 | -0.114 |
| PPE68_KO | 0.0 | -0.026 |
| glycerol2 | -1.279 | -1.772 |
| lignocerate | -1.583 | -1.842 |
| oleate | -1.55 | -2.678 |
| phosphatidylcholine | -2.158 | -2.389 |
| acetate | -0.499 | -0.09 |
| glucAc | -0.944 | 0.511 |
| Rv0950ko | -0.286 | -0.383 |
| Rv1096ko | 1.134 | -0.208 |
| Rv3684ko | 0.478 | -0.295 |
| delta_otsA_trehalose | 0.739 | 0.476 |