Top 10 genes with highest correlation to Rv3920c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2125/- | (cc=0.6277) | info on Rv2125/- |
| Rv0561c/- | (cc=0.5948) | info on Rv0561c/- |
| Rv0012/- | (cc=0.5937) | info on Rv0012/- |
| Rv1824/- | (cc=0.5761) | info on Rv1824/- |
| Rv1165/typA | (cc=0.5499) | info on Rv1165/typA |
| Rv3586/- | (cc=0.5426) | info on Rv3586/- |
| Rv2672/- | (cc=0.5176) | info on Rv2672/- |
| Rv2344c/dgt | (cc=0.5172) | info on Rv2344c/dgt |
| Rv1473/- | (cc=0.5143) | info on Rv1473/- |
| Rv2733c/- | (cc=0.4989) | info on Rv2733c/- |
Correlation of Rv3920c/- with Rv2125/-
Normalized LFCs for Rv3920c/-:
(description and provenance of datasets)
| Rv3920c/- | Rv2125/- | |
| Fe_supp_jason_reseq | 1.659 | 0.845 |
| low_pH_jason_reseq | -0.811 | -0.231 |
| NO_jason_reseq | 2.489 | -0.11 |
| B6_jason_reseq | 0.795 | 0.428 |
| MHCII_jason_reseq | 1.408 | 0.874 |
| Isoniazid02 | 1.264 | 1.013 |
| Rifampicin4 | -0.601 | -0.171 |
| Ethambutol3 | 1.903 | 0.06 |
| Meropenem3 | -0.266 | 0.159 |
| Vancomycin16 | -1.234 | -0.106 |
| Rv2680_day32 | -0.672 | -0.055 |
| H37Rv_KO_MarP | 3.769 | 0.876 |
| hypoxia_3wks | -0.295 | 0.0 |
| hypoxia_6wks | -1.297 | -0.299 |
| glycerol | 4.292 | 1.122 |
| cholesterol | 3.005 | 0.722 |
| AJ | 0.274 | 0.368 |
| Bibs02 | 0.898 | -0.371 |
| Bibs02c | 0.168 | 0.394 |
| BL6 | -1.073 | -1.865 |
| BL6a | 0.0 | -0.342 |
| BXD01 | -0.999 | -1.648 |
| BXD010 | -1.227 | -1.35 |
| BXD011 | -0.772 | -1.534 |
| BXD03 | -1.295 | -1.12 |
| BXD04 | -0.498 | -1.647 |
| BXD05 | -0.919 | -0.946 |
| BXD06 | -1.024 | -1.222 |
| BXD07 | -1.326 | -1.3 |
| BXD08 | -1.274 | -1.139 |
| BXD09 | -1.205 | -1.068 |
| CAST | -1.074 | -0.661 |
| CCcont | 1.492 | -1.205 |
| DS01 | 0.53 | 0.022 |
| DS02 | 0.699 | -0.391 |
| DS04 | 1.147 | 0.475 |
| DS0c | -0.289 | -0.035 |
| GP01 | -0.283 | 0.67 |
| GP02 | -0.335 | 0.046 |
| GP0c | 0.942 | 0.522 |
| NOD | -0.524 | 0.145 |
| NZO | -1.711 | -0.539 |
| PWK | 0.158 | -0.826 |
| H37Rv_KO_CtpC | -1.393 | -1.043 |
| H37Rv_KO_CtpD | -0.51 | -1.512 |
| H37Rv_KO_Rv1272 | -1.21 | -1.109 |
| H37Rv_KO_SugABC | 0.154 | 0.948 |
| H37Rv_KO_MbtN | 0.533 | 0.311 |
| Trans05 | -0.893 | -1.4 |
| macrophage_unactivated | 1.982 | 0.249 |
| IL1 | -0.409 | -0.024 |
| Rapamycin | 0.0 | 0.43 |
| Tcell | 0.411 | -0.971 |
| GMCSF | -0.364 | 0.042 |
| IFNab | 0.0 | 0.239 |
| IFNg | -0.369 | -0.224 |
| IFNg_GMCSF1 | 1.093 | 0.575 |
| Rv1432_day32 | -0.18 | 0.095 |
| Rv1565c_day32 | -0.068 | 0.485 |
| secA2_input | 1.147 | 0.106 |
| delta_Rv3594 | 1.348 | 0.965 |
| delta_Rv3717 | 0.307 | 1.072 |
| delta_Rv3811 | 0.944 | 1.184 |
| delta_Rv0954 | 1.243 | 1.26 |
| PonA1 | 1.281 | 0.965 |
| EccD1_KO | 0.276 | 0.562 |
| EspI_KO | -0.528 | 0.502 |
| PE35_KO | 0.099 | 0.16 |
| PPE68_KO | -0.054 | 0.474 |
| glycerol2 | -1.822 | -1.033 |
| lignocerate | -2.043 | -0.669 |
| oleate | -2.379 | -0.88 |
| phosphatidylcholine | -1.671 | -0.819 |
| acetate | 1.548 | 0.318 |
| glucAc | 1.385 | 0.0 |
| Rv0950ko | 0.709 | -0.151 |
| Rv1096ko | -0.112 | 0.106 |
| Rv3684ko | 0.511 | -0.747 |
| delta_otsA_trehalose | -0.596 | 0.132 |