Top 10 genes with highest correlation to Rv3920c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2125/- | (cc=0.6277) | info on Rv2125/- |
| Rv0561c/- | (cc=0.5948) | info on Rv0561c/- |
| Rv0012/- | (cc=0.5937) | info on Rv0012/- |
| Rv1824/- | (cc=0.5761) | info on Rv1824/- |
| Rv1165/typA | (cc=0.5499) | info on Rv1165/typA |
| Rv3586/- | (cc=0.5426) | info on Rv3586/- |
| Rv2672/- | (cc=0.5176) | info on Rv2672/- |
| Rv2344c/dgt | (cc=0.5172) | info on Rv2344c/dgt |
| Rv1473/- | (cc=0.5143) | info on Rv1473/- |
| Rv2733c/- | (cc=0.4989) | info on Rv2733c/- |
Correlation of Rv3920c/- with Rv1824/-
Normalized LFCs for Rv3920c/-:
(description and provenance of datasets)
| Rv3920c/- | Rv1824/- | |
| Fe_supp_jason_reseq | 1.659 | 2.671 |
| low_pH_jason_reseq | -0.811 | 1.377 |
| NO_jason_reseq | 2.489 | 0.788 |
| B6_jason_reseq | 0.795 | 0.607 |
| MHCII_jason_reseq | 1.408 | 1.132 |
| Isoniazid02 | 1.264 | -0.274 |
| Rifampicin4 | -0.601 | -2.185 |
| Ethambutol3 | 1.903 | -1.366 |
| Meropenem3 | -0.266 | -1.095 |
| Vancomycin16 | -1.234 | -3.526 |
| Rv2680_day32 | -0.672 | -0.131 |
| H37Rv_KO_MarP | 3.769 | 6.0 |
| hypoxia_3wks | -0.295 | -2.269 |
| hypoxia_6wks | -1.297 | -2.827 |
| glycerol | 4.292 | 0.341 |
| cholesterol | 3.005 | -1.129 |
| AJ | 0.274 | -2.403 |
| Bibs02 | 0.898 | -1.191 |
| Bibs02c | 0.168 | -0.876 |
| BL6 | -1.073 | -1.45 |
| BL6a | 0.0 | -0.96 |
| BXD01 | -0.999 | -2.453 |
| BXD010 | -1.227 | -2.913 |
| BXD011 | -0.772 | -1.859 |
| BXD03 | -1.295 | -2.84 |
| BXD04 | -0.498 | -2.813 |
| BXD05 | -0.919 | -2.723 |
| BXD06 | -1.024 | -2.803 |
| BXD07 | -1.326 | -2.359 |
| BXD08 | -1.274 | -3.158 |
| BXD09 | -1.205 | -2.394 |
| CAST | -1.074 | -3.924 |
| CCcont | 1.492 | 1.168 |
| DS01 | 0.53 | -2.897 |
| DS02 | 0.699 | -2.521 |
| DS04 | 1.147 | -0.94 |
| DS0c | -0.289 | -0.247 |
| GP01 | -0.283 | -2.073 |
| GP02 | -0.335 | -1.976 |
| GP0c | 0.942 | -2.84 |
| NOD | -0.524 | -3.279 |
| NZO | -1.711 | -2.744 |
| PWK | 0.158 | -3.969 |
| H37Rv_KO_CtpC | -1.393 | -1.026 |
| H37Rv_KO_CtpD | -0.51 | -1.35 |
| H37Rv_KO_Rv1272 | -1.21 | 0.225 |
| H37Rv_KO_SugABC | 0.154 | -2.163 |
| H37Rv_KO_MbtN | 0.533 | -1.756 |
| Trans05 | -0.893 | 0.121 |
| macrophage_unactivated | 1.982 | 0.129 |
| IL1 | -0.409 | -0.519 |
| Rapamycin | 0.0 | 0.7 |
| Tcell | 0.411 | -0.277 |
| GMCSF | -0.364 | -1.769 |
| IFNab | 0.0 | -1.645 |
| IFNg | -0.369 | -1.147 |
| IFNg_GMCSF1 | 1.093 | -2.105 |
| Rv1432_day32 | -0.18 | -2.726 |
| Rv1565c_day32 | -0.068 | 0.49 |
| secA2_input | 1.147 | 1.509 |
| delta_Rv3594 | 1.348 | 1.576 |
| delta_Rv3717 | 0.307 | -0.522 |
| delta_Rv3811 | 0.944 | 0.311 |
| delta_Rv0954 | 1.243 | -0.699 |
| PonA1 | 1.281 | 0.211 |
| EccD1_KO | 0.276 | 0.678 |
| EspI_KO | -0.528 | 0.0 |
| PE35_KO | 0.099 | 2.438 |
| PPE68_KO | -0.054 | 1.801 |
| glycerol2 | -1.822 | -4.161 |
| lignocerate | -2.043 | -1.458 |
| oleate | -2.379 | -5.464 |
| phosphatidylcholine | -1.671 | -0.416 |
| acetate | 1.548 | 0.625 |
| glucAc | 1.385 | 0.656 |
| Rv0950ko | 0.709 | -0.344 |
| Rv1096ko | -0.112 | -3.308 |
| Rv3684ko | 0.511 | -1.159 |
| delta_otsA_trehalose | -0.596 | -0.329 |