Top 10 genes with highest correlation to Rv3864/espE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2179c/- | (cc=0.7226) | info on Rv2179c/- |
| Rv2569c/- | (cc=0.7148) | info on Rv2569c/- |
| Rv0502/- | (cc=0.6569) | info on Rv0502/- |
| Rv3050c/- | (cc=0.6401) | info on Rv3050c/- |
| Rv1633/uvrB | (cc=0.6342) | info on Rv1633/uvrB |
| Rv2190c/- | (cc=0.6272) | info on Rv2190c/- |
| Rv0642c/mmaA4 | (cc=0.6243) | info on Rv0642c/mmaA4 |
| Rv2584c/apt | (cc=0.6219) | info on Rv2584c/apt |
| Rv0929/pstC2 | (cc=0.6216) | info on Rv0929/pstC2 |
| Rv0930/pstA1 | (cc=0.6206) | info on Rv0930/pstA1 |
Correlation of Rv3864/espE with Rv3050c/-
Normalized LFCs for Rv3864/espE:
(description and provenance of datasets)
| Rv3864/espE | Rv3050c/- | |
| Fe_supp_jason_reseq | -0.532 | -1.053 |
| low_pH_jason_reseq | 3.42 | 1.193 |
| NO_jason_reseq | -0.69 | 0.522 |
| B6_jason_reseq | -1.402 | -2.547 |
| MHCII_jason_reseq | -1.234 | -1.955 |
| Isoniazid02 | -0.39 | -0.063 |
| Rifampicin4 | -0.203 | -2.594 |
| Ethambutol3 | 0.142 | -0.612 |
| Meropenem3 | 0.768 | -0.918 |
| Vancomycin16 | 0.191 | -1.496 |
| Rv2680_day32 | -0.228 | 1.932 |
| H37Rv_KO_MarP | -2.191 | 0.906 |
| hypoxia_3wks | -0.371 | 1.611 |
| hypoxia_6wks | -0.263 | 2.7 |
| glycerol | 0.709 | 1.104 |
| cholesterol | 0.614 | -0.098 |
| AJ | 0.0 | 0.541 |
| Bibs02 | 0.0 | 0.115 |
| Bibs02c | 0.887 | 0.258 |
| BL6 | 2.486 | 2.934 |
| BL6a | 2.131 | 4.475 |
| BXD01 | 2.047 | 3.241 |
| BXD010 | 1.598 | 3.787 |
| BXD011 | 1.811 | 5.572 |
| BXD03 | 0.664 | 3.365 |
| BXD04 | 1.854 | 2.343 |
| BXD05 | 1.878 | 3.473 |
| BXD06 | 2.59 | 3.983 |
| BXD07 | 1.003 | 3.042 |
| BXD08 | 1.781 | 3.65 |
| BXD09 | 2.036 | 4.687 |
| CAST | 0.0 | -0.501 |
| CCcont | 3.145 | 2.452 |
| DS01 | 1.001 | -0.926 |
| DS02 | 0.764 | -0.852 |
| DS04 | 1.689 | 2.503 |
| DS0c | 0.596 | 0.616 |
| GP01 | 1.35 | 3.843 |
| GP02 | 0.159 | 1.738 |
| GP0c | 1.072 | 3.849 |
| NOD | 0.225 | -0.151 |
| NZO | 0.0 | -0.433 |
| PWK | 0.831 | -0.274 |
| H37Rv_KO_CtpC | 0.571 | 1.177 |
| H37Rv_KO_CtpD | 1.044 | 1.634 |
| H37Rv_KO_Rv1272 | 2.149 | 3.492 |
| H37Rv_KO_SugABC | 3.545 | 4.142 |
| H37Rv_KO_MbtN | 2.695 | 2.344 |
| Trans05 | 2.677 | 4.016 |
| macrophage_unactivated | 2.228 | 0.063 |
| IL1 | -0.736 | 0.291 |
| Rapamycin | 0.651 | 1.019 |
| Tcell | 2.3 | 2.255 |
| GMCSF | 0.89 | -0.573 |
| IFNab | 1.197 | 0.599 |
| IFNg | -0.663 | -1.227 |
| IFNg_GMCSF1 | 1.059 | -0.61 |
| Rv1432_day32 | -0.664 | 5.592 |
| Rv1565c_day32 | 0.182 | 0.458 |
| secA2_input | -1.387 | 0.321 |
| delta_Rv3594 | 0.962 | 1.42 |
| delta_Rv3717 | 1.328 | 3.259 |
| delta_Rv3811 | 0.87 | 0.932 |
| delta_Rv0954 | -0.615 | -1.765 |
| PonA1 | -1.937 | -1.855 |
| EccD1_KO | -1.694 | -2.072 |
| EspI_KO | -2.718 | -3.274 |
| PE35_KO | 0.0 | -1.613 |
| PPE68_KO | 0.077 | -1.261 |
| glycerol2 | 0.028 | -3.636 |
| lignocerate | -0.296 | -2.568 |
| oleate | -0.801 | -3.374 |
| phosphatidylcholine | -0.515 | -3.892 |
| acetate | -0.364 | -1.584 |
| glucAc | 0.286 | -0.723 |
| Rv0950ko | -1.375 | -0.874 |
| Rv1096ko | -0.184 | -1.384 |
| Rv3684ko | -0.982 | 1.952 |
| delta_otsA_trehalose | 0.366 | -0.519 |