Top 10 genes with highest correlation to Rv3864/espE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2179c/- | (cc=0.7226) | info on Rv2179c/- |
| Rv2569c/- | (cc=0.7148) | info on Rv2569c/- |
| Rv0502/- | (cc=0.6569) | info on Rv0502/- |
| Rv3050c/- | (cc=0.6401) | info on Rv3050c/- |
| Rv1633/uvrB | (cc=0.6342) | info on Rv1633/uvrB |
| Rv2190c/- | (cc=0.6272) | info on Rv2190c/- |
| Rv0642c/mmaA4 | (cc=0.6243) | info on Rv0642c/mmaA4 |
| Rv2584c/apt | (cc=0.6219) | info on Rv2584c/apt |
| Rv0929/pstC2 | (cc=0.6216) | info on Rv0929/pstC2 |
| Rv0930/pstA1 | (cc=0.6206) | info on Rv0930/pstA1 |
Correlation of Rv3864/espE with Rv0929/pstC2
Normalized LFCs for Rv3864/espE:
(description and provenance of datasets)
| Rv3864/espE | Rv0929/pstC2 | |
| Fe_supp_jason_reseq | -0.532 | -2.603 |
| low_pH_jason_reseq | 3.42 | 3.033 |
| NO_jason_reseq | -0.69 | -2.625 |
| B6_jason_reseq | -1.402 | 1.639 |
| MHCII_jason_reseq | -1.234 | 0.514 |
| Isoniazid02 | -0.39 | -0.281 |
| Rifampicin4 | -0.203 | -3.831 |
| Ethambutol3 | 0.142 | 1.007 |
| Meropenem3 | 0.768 | -1.942 |
| Vancomycin16 | 0.191 | -1.647 |
| Rv2680_day32 | -0.228 | 3.528 |
| H37Rv_KO_MarP | -2.191 | -3.056 |
| hypoxia_3wks | -0.371 | -4.406 |
| hypoxia_6wks | -0.263 | -0.061 |
| glycerol | 0.709 | 1.599 |
| cholesterol | 0.614 | 3.859 |
| AJ | 0.0 | 0.573 |
| Bibs02 | 0.0 | 2.832 |
| Bibs02c | 0.887 | 1.441 |
| BL6 | 2.486 | 5.842 |
| BL6a | 2.131 | 6.0 |
| BXD01 | 2.047 | 6.0 |
| BXD010 | 1.598 | 6.0 |
| BXD011 | 1.811 | 6.0 |
| BXD03 | 0.664 | 5.602 |
| BXD04 | 1.854 | 6.0 |
| BXD05 | 1.878 | 6.0 |
| BXD06 | 2.59 | 6.0 |
| BXD07 | 1.003 | 6.0 |
| BXD08 | 1.781 | 6.0 |
| BXD09 | 2.036 | 6.0 |
| CAST | 0.0 | 2.361 |
| CCcont | 3.145 | 3.417 |
| DS01 | 1.001 | -0.352 |
| DS02 | 0.764 | 0.285 |
| DS04 | 1.689 | 3.18 |
| DS0c | 0.596 | 0.762 |
| GP01 | 1.35 | 4.532 |
| GP02 | 0.159 | 6.0 |
| GP0c | 1.072 | 6.0 |
| NOD | 0.225 | 0.295 |
| NZO | 0.0 | 0.38 |
| PWK | 0.831 | 2.384 |
| H37Rv_KO_CtpC | 0.571 | 4.283 |
| H37Rv_KO_CtpD | 1.044 | 2.232 |
| H37Rv_KO_Rv1272 | 2.149 | 5.607 |
| H37Rv_KO_SugABC | 3.545 | 5.047 |
| H37Rv_KO_MbtN | 2.695 | 6.0 |
| Trans05 | 2.677 | 5.884 |
| macrophage_unactivated | 2.228 | -2.509 |
| IL1 | -0.736 | -2.358 |
| Rapamycin | 0.651 | -3.686 |
| Tcell | 2.3 | -1.922 |
| GMCSF | 0.89 | -2.698 |
| IFNab | 1.197 | 3.419 |
| IFNg | -0.663 | -4.479 |
| IFNg_GMCSF1 | 1.059 | -5.156 |
| Rv1432_day32 | -0.664 | 6.0 |
| Rv1565c_day32 | 0.182 | 0.415 |
| secA2_input | -1.387 | -3.467 |
| delta_Rv3594 | 0.962 | 1.036 |
| delta_Rv3717 | 1.328 | 3.279 |
| delta_Rv3811 | 0.87 | 1.152 |
| delta_Rv0954 | -0.615 | -3.841 |
| PonA1 | -1.937 | -2.253 |
| EccD1_KO | -1.694 | -1.533 |
| EspI_KO | -2.718 | -1.974 |
| PE35_KO | 0.0 | -0.601 |
| PPE68_KO | 0.077 | -0.765 |
| glycerol2 | 0.028 | -4.614 |
| lignocerate | -0.296 | -2.423 |
| oleate | -0.801 | -4.669 |
| phosphatidylcholine | -0.515 | -3.748 |
| acetate | -0.364 | -0.83 |
| glucAc | 0.286 | -1.023 |
| Rv0950ko | -1.375 | -4.158 |
| Rv1096ko | -0.184 | 0.344 |
| Rv3684ko | -0.982 | -0.249 |
| delta_otsA_trehalose | 0.366 | -1.89 |