Top 10 genes with highest correlation to Rv3864/espE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2179c/- | (cc=0.7226) | info on Rv2179c/- |
| Rv2569c/- | (cc=0.7148) | info on Rv2569c/- |
| Rv0502/- | (cc=0.6569) | info on Rv0502/- |
| Rv3050c/- | (cc=0.6401) | info on Rv3050c/- |
| Rv1633/uvrB | (cc=0.6342) | info on Rv1633/uvrB |
| Rv2190c/- | (cc=0.6272) | info on Rv2190c/- |
| Rv0642c/mmaA4 | (cc=0.6243) | info on Rv0642c/mmaA4 |
| Rv2584c/apt | (cc=0.6219) | info on Rv2584c/apt |
| Rv0929/pstC2 | (cc=0.6216) | info on Rv0929/pstC2 |
| Rv0930/pstA1 | (cc=0.6206) | info on Rv0930/pstA1 |
Correlation of Rv3864/espE with Rv2179c/-
Normalized LFCs for Rv3864/espE:
(description and provenance of datasets)
| Rv3864/espE | Rv2179c/- | |
| Fe_supp_jason_reseq | -0.532 | 0.655 |
| low_pH_jason_reseq | 3.42 | 1.233 |
| NO_jason_reseq | -0.69 | -1.536 |
| B6_jason_reseq | -1.402 | -0.496 |
| MHCII_jason_reseq | -1.234 | -0.572 |
| Isoniazid02 | -0.39 | -1.026 |
| Rifampicin4 | -0.203 | -4.473 |
| Ethambutol3 | 0.142 | 1.423 |
| Meropenem3 | 0.768 | 0.338 |
| Vancomycin16 | 0.191 | -4.247 |
| Rv2680_day32 | -0.228 | -0.249 |
| H37Rv_KO_MarP | -2.191 | -4.589 |
| hypoxia_3wks | -0.371 | -6.0 |
| hypoxia_6wks | -0.263 | -5.055 |
| glycerol | 0.709 | 1.972 |
| cholesterol | 0.614 | -0.145 |
| AJ | 0.0 | -0.232 |
| Bibs02 | 0.0 | -0.183 |
| Bibs02c | 0.887 | -0.209 |
| BL6 | 2.486 | 3.134 |
| BL6a | 2.131 | 0.776 |
| BXD01 | 2.047 | 2.751 |
| BXD010 | 1.598 | 1.471 |
| BXD011 | 1.811 | 0.795 |
| BXD03 | 0.664 | 1.509 |
| BXD04 | 1.854 | 3.583 |
| BXD05 | 1.878 | 1.21 |
| BXD06 | 2.59 | 3.86 |
| BXD07 | 1.003 | 1.245 |
| BXD08 | 1.781 | 3.613 |
| BXD09 | 2.036 | 1.657 |
| CAST | 0.0 | -0.23 |
| CCcont | 3.145 | 3.902 |
| DS01 | 1.001 | -0.236 |
| DS02 | 0.764 | -0.217 |
| DS04 | 1.689 | 2.459 |
| DS0c | 0.596 | -0.217 |
| GP01 | 1.35 | 0.508 |
| GP02 | 0.159 | 0.269 |
| GP0c | 1.072 | 0.119 |
| NOD | 0.225 | 1.282 |
| NZO | 0.0 | 0.0 |
| PWK | 0.831 | -0.196 |
| H37Rv_KO_CtpC | 0.571 | 0.835 |
| H37Rv_KO_CtpD | 1.044 | 0.651 |
| H37Rv_KO_Rv1272 | 2.149 | 0.725 |
| H37Rv_KO_SugABC | 3.545 | 2.752 |
| H37Rv_KO_MbtN | 2.695 | 4.067 |
| Trans05 | 2.677 | 0.947 |
| macrophage_unactivated | 2.228 | 3.156 |
| IL1 | -0.736 | 0.451 |
| Rapamycin | 0.651 | 1.63 |
| Tcell | 2.3 | 4.989 |
| GMCSF | 0.89 | -1.143 |
| IFNab | 1.197 | 0.157 |
| IFNg | -0.663 | -1.157 |
| IFNg_GMCSF1 | 1.059 | 0.163 |
| Rv1432_day32 | -0.664 | -0.763 |
| Rv1565c_day32 | 0.182 | 0.0 |
| secA2_input | -1.387 | -1.154 |
| delta_Rv3594 | 0.962 | 1.427 |
| delta_Rv3717 | 1.328 | 2.503 |
| delta_Rv3811 | 0.87 | 1.463 |
| delta_Rv0954 | -0.615 | -2.271 |
| PonA1 | -1.937 | -4.067 |
| EccD1_KO | -1.694 | -2.513 |
| EspI_KO | -2.718 | -1.095 |
| PE35_KO | 0.0 | 0.449 |
| PPE68_KO | 0.077 | 1.001 |
| glycerol2 | 0.028 | 0.352 |
| lignocerate | -0.296 | -3.383 |
| oleate | -0.801 | -5.721 |
| phosphatidylcholine | -0.515 | -3.891 |
| acetate | -0.364 | -0.981 |
| glucAc | 0.286 | -0.931 |
| Rv0950ko | -1.375 | -3.618 |
| Rv1096ko | -0.184 | -0.992 |
| Rv3684ko | -0.982 | -0.508 |
| delta_otsA_trehalose | 0.366 | 0.234 |