Top 10 genes with highest correlation to Rv3853/rraA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3614c/espD | (cc=0.5007) | info on Rv3614c/espD |
| Rv3400/- | (cc=0.4537) | info on Rv3400/- |
| Rv2087/- | (cc=0.4187) | info on Rv2087/- |
| Rv1168c/PPE17 | (cc=0.4131) | info on Rv1168c/PPE17 |
| Rv0839/- | (cc=0.4056) | info on Rv0839/- |
| Rv1302/rfe | (cc=0.3996) | info on Rv1302/rfe |
| Rv2411c/- | (cc=0.3985) | info on Rv2411c/- |
| Rv1314c/- | (cc=0.3953) | info on Rv1314c/- |
| Rv2409c/- | (cc=0.3953) | info on Rv2409c/- |
| Rv0798c/cfp29 | (cc=0.3935) | info on Rv0798c/cfp29 |
Correlation of Rv3853/rraA with Rv2409c/-
Normalized LFCs for Rv3853/rraA:
(description and provenance of datasets)
| Rv3853/rraA | Rv2409c/- | |
| Fe_supp_jason_reseq | 1.086 | 1.334 |
| low_pH_jason_reseq | -0.44 | -1.134 |
| NO_jason_reseq | 0.874 | -1.42 |
| B6_jason_reseq | 0.296 | 0.546 |
| MHCII_jason_reseq | -2.243 | 0.416 |
| Isoniazid02 | -0.314 | -2.007 |
| Rifampicin4 | -1.922 | -0.455 |
| Ethambutol3 | -0.505 | -0.563 |
| Meropenem3 | -0.151 | 0.128 |
| Vancomycin16 | -0.218 | -0.462 |
| Rv2680_day32 | 2.115 | -0.039 |
| H37Rv_KO_MarP | 0.697 | 1.03 |
| hypoxia_3wks | -0.279 | -0.686 |
| hypoxia_6wks | -0.781 | -0.612 |
| glycerol | 0.452 | 0.483 |
| cholesterol | -0.044 | 0.451 |
| AJ | -0.983 | -0.983 |
| Bibs02 | -0.204 | -1.805 |
| Bibs02c | -0.456 | -0.732 |
| BL6 | -0.603 | -1.081 |
| BL6a | -0.547 | -1.116 |
| BXD01 | 0.067 | -0.392 |
| BXD010 | -0.908 | -1.217 |
| BXD011 | -1.463 | -0.582 |
| BXD03 | 0.269 | -1.146 |
| BXD04 | -0.213 | -1.447 |
| BXD05 | -1.125 | -1.231 |
| BXD06 | -0.628 | -1.131 |
| BXD07 | -0.771 | -1.446 |
| BXD08 | 0.231 | -0.684 |
| BXD09 | -0.346 | -1.191 |
| CAST | 0.249 | -1.078 |
| CCcont | -0.383 | -0.407 |
| DS01 | -2.057 | -2.467 |
| DS02 | -2.05 | -3.088 |
| DS04 | -1.376 | -3.18 |
| DS0c | -1.966 | -1.479 |
| GP01 | 1.966 | -1.348 |
| GP02 | 0.94 | 0.041 |
| GP0c | 0.491 | -0.429 |
| NOD | 2.93 | 0.361 |
| NZO | -3.112 | -0.581 |
| PWK | -0.155 | -1.105 |
| H37Rv_KO_CtpC | -0.634 | 1.003 |
| H37Rv_KO_CtpD | 0.252 | -1.181 |
| H37Rv_KO_Rv1272 | 0.989 | 0.0 |
| H37Rv_KO_SugABC | -1.651 | -1.406 |
| H37Rv_KO_MbtN | 1.625 | -0.777 |
| Trans05 | -0.31 | -0.272 |
| macrophage_unactivated | 1.146 | 0.155 |
| IL1 | 0.151 | 1.385 |
| Rapamycin | -0.08 | 1.292 |
| Tcell | 1.906 | 0.43 |
| GMCSF | -1.682 | -0.066 |
| IFNab | 0.514 | -1.07 |
| IFNg | -0.286 | 1.0 |
| IFNg_GMCSF1 | 0.462 | -0.456 |
| Rv1432_day32 | -0.244 | -0.194 |
| Rv1565c_day32 | -0.706 | 0.611 |
| secA2_input | 0.615 | 2.143 |
| delta_Rv3594 | -0.776 | -0.22 |
| delta_Rv3717 | -0.176 | -0.688 |
| delta_Rv3811 | 0.431 | -0.29 |
| delta_Rv0954 | -0.655 | -0.23 |
| PonA1 | -1.654 | -0.286 |
| EccD1_KO | 1.76 | 0.089 |
| EspI_KO | 0.439 | 0.114 |
| PE35_KO | 2.333 | 0.557 |
| PPE68_KO | 1.677 | 0.65 |
| glycerol2 | 0.876 | 2.169 |
| lignocerate | -0.149 | 1.957 |
| oleate | 1.394 | 0.988 |
| phosphatidylcholine | 0.84 | 1.562 |
| acetate | -1.536 | 0.037 |
| glucAc | -1.721 | -0.272 |
| Rv0950ko | 1.595 | 0.211 |
| Rv1096ko | 0.262 | -0.112 |
| Rv3684ko | -0.406 | -0.72 |
| delta_otsA_trehalose | 0.28 | -1.072 |