Top 10 genes with highest correlation to Rv3853/rraA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3614c/espD | (cc=0.5007) | info on Rv3614c/espD |
| Rv3400/- | (cc=0.4537) | info on Rv3400/- |
| Rv2087/- | (cc=0.4187) | info on Rv2087/- |
| Rv1168c/PPE17 | (cc=0.4131) | info on Rv1168c/PPE17 |
| Rv0839/- | (cc=0.4056) | info on Rv0839/- |
| Rv1302/rfe | (cc=0.3996) | info on Rv1302/rfe |
| Rv2411c/- | (cc=0.3985) | info on Rv2411c/- |
| Rv1314c/- | (cc=0.3953) | info on Rv1314c/- |
| Rv2409c/- | (cc=0.3953) | info on Rv2409c/- |
| Rv0798c/cfp29 | (cc=0.3935) | info on Rv0798c/cfp29 |
Correlation of Rv3853/rraA with Rv1302/rfe
Normalized LFCs for Rv3853/rraA:
(description and provenance of datasets)
| Rv3853/rraA | Rv1302/rfe | |
| Fe_supp_jason_reseq | 1.086 | 1.437 |
| low_pH_jason_reseq | -0.44 | 0.465 |
| NO_jason_reseq | 0.874 | 1.173 |
| B6_jason_reseq | 0.296 | 0.957 |
| MHCII_jason_reseq | -2.243 | -0.309 |
| Isoniazid02 | -0.314 | 0.453 |
| Rifampicin4 | -1.922 | -0.192 |
| Ethambutol3 | -0.505 | 0.732 |
| Meropenem3 | -0.151 | 0.502 |
| Vancomycin16 | -0.218 | 0.18 |
| Rv2680_day32 | 2.115 | 1.779 |
| H37Rv_KO_MarP | 0.697 | -0.766 |
| hypoxia_3wks | -0.279 | -0.14 |
| hypoxia_6wks | -0.781 | -0.146 |
| glycerol | 0.452 | -0.054 |
| cholesterol | -0.044 | -1.01 |
| AJ | -0.983 | 0.674 |
| Bibs02 | -0.204 | -0.968 |
| Bibs02c | -0.456 | -0.268 |
| BL6 | -0.603 | -1.086 |
| BL6a | -0.547 | 0.154 |
| BXD01 | 0.067 | 0.737 |
| BXD010 | -0.908 | 0.115 |
| BXD011 | -1.463 | 0.931 |
| BXD03 | 0.269 | -0.444 |
| BXD04 | -0.213 | 0.228 |
| BXD05 | -1.125 | 0.201 |
| BXD06 | -0.628 | 0.786 |
| BXD07 | -0.771 | 0.285 |
| BXD08 | 0.231 | 1.099 |
| BXD09 | -0.346 | 0.88 |
| CAST | 0.249 | 1.525 |
| CCcont | -0.383 | -0.791 |
| DS01 | -2.057 | -0.527 |
| DS02 | -2.05 | -0.09 |
| DS04 | -1.376 | -0.672 |
| DS0c | -1.966 | -0.671 |
| GP01 | 1.966 | 1.155 |
| GP02 | 0.94 | 0.603 |
| GP0c | 0.491 | 0.907 |
| NOD | 2.93 | 0.952 |
| NZO | -3.112 | 0.053 |
| PWK | -0.155 | 0.026 |
| H37Rv_KO_CtpC | -0.634 | 1.292 |
| H37Rv_KO_CtpD | 0.252 | 1.526 |
| H37Rv_KO_Rv1272 | 0.989 | 0.598 |
| H37Rv_KO_SugABC | -1.651 | 0.171 |
| H37Rv_KO_MbtN | 1.625 | 1.816 |
| Trans05 | -0.31 | 0.611 |
| macrophage_unactivated | 1.146 | -0.069 |
| IL1 | 0.151 | -0.332 |
| Rapamycin | -0.08 | -1.295 |
| Tcell | 1.906 | 0.404 |
| GMCSF | -1.682 | -0.615 |
| IFNab | 0.514 | -0.704 |
| IFNg | -0.286 | 0.168 |
| IFNg_GMCSF1 | 0.462 | -0.654 |
| Rv1432_day32 | -0.244 | 0.305 |
| Rv1565c_day32 | -0.706 | -0.294 |
| secA2_input | 0.615 | 1.169 |
| delta_Rv3594 | -0.776 | -0.369 |
| delta_Rv3717 | -0.176 | -0.5 |
| delta_Rv3811 | 0.431 | -0.407 |
| delta_Rv0954 | -0.655 | -0.934 |
| PonA1 | -1.654 | -0.082 |
| EccD1_KO | 1.76 | -0.082 |
| EspI_KO | 0.439 | 0.761 |
| PE35_KO | 2.333 | 0.07 |
| PPE68_KO | 1.677 | 0.586 |
| glycerol2 | 0.876 | 0.838 |
| lignocerate | -0.149 | 0.175 |
| oleate | 1.394 | 1.191 |
| phosphatidylcholine | 0.84 | 0.957 |
| acetate | -1.536 | -0.032 |
| glucAc | -1.721 | -0.039 |
| Rv0950ko | 1.595 | 1.185 |
| Rv1096ko | 0.262 | 0.492 |
| Rv3684ko | -0.406 | 1.844 |
| delta_otsA_trehalose | 0.28 | -0.662 |