Top 10 genes with highest correlation to Rv3853/rraA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3614c/espD | (cc=0.5007) | info on Rv3614c/espD |
| Rv3400/- | (cc=0.4537) | info on Rv3400/- |
| Rv2087/- | (cc=0.4187) | info on Rv2087/- |
| Rv1168c/PPE17 | (cc=0.4131) | info on Rv1168c/PPE17 |
| Rv0839/- | (cc=0.4056) | info on Rv0839/- |
| Rv1302/rfe | (cc=0.3996) | info on Rv1302/rfe |
| Rv2411c/- | (cc=0.3985) | info on Rv2411c/- |
| Rv1314c/- | (cc=0.3953) | info on Rv1314c/- |
| Rv2409c/- | (cc=0.3953) | info on Rv2409c/- |
| Rv0798c/cfp29 | (cc=0.3935) | info on Rv0798c/cfp29 |
Correlation of Rv3853/rraA with Rv3614c/espD
Normalized LFCs for Rv3853/rraA:
(description and provenance of datasets)
| Rv3853/rraA | Rv3614c/espD | |
| Fe_supp_jason_reseq | 1.086 | -0.587 |
| low_pH_jason_reseq | -0.44 | -0.668 |
| NO_jason_reseq | 0.874 | -0.795 |
| B6_jason_reseq | 0.296 | -2.337 |
| MHCII_jason_reseq | -2.243 | -2.243 |
| Isoniazid02 | -0.314 | 0.007 |
| Rifampicin4 | -1.922 | -0.187 |
| Ethambutol3 | -0.505 | 0.499 |
| Meropenem3 | -0.151 | 0.052 |
| Vancomycin16 | -0.218 | 0.013 |
| Rv2680_day32 | 2.115 | -1.55 |
| H37Rv_KO_MarP | 0.697 | 1.281 |
| hypoxia_3wks | -0.279 | -0.159 |
| hypoxia_6wks | -0.781 | -1.084 |
| glycerol | 0.452 | -1.3 |
| cholesterol | -0.044 | -0.729 |
| AJ | -0.983 | -5.192 |
| Bibs02 | -0.204 | -5.457 |
| Bibs02c | -0.456 | -4.547 |
| BL6 | -0.603 | -1.299 |
| BL6a | -0.547 | -4.873 |
| BXD01 | 0.067 | -2.886 |
| BXD010 | -0.908 | -2.241 |
| BXD011 | -1.463 | -2.548 |
| BXD03 | 0.269 | -2.31 |
| BXD04 | -0.213 | -2.767 |
| BXD05 | -1.125 | -1.613 |
| BXD06 | -0.628 | -2.794 |
| BXD07 | -0.771 | -2.523 |
| BXD08 | 0.231 | -3.347 |
| BXD09 | -0.346 | -3.276 |
| CAST | 0.249 | -3.997 |
| CCcont | -0.383 | -0.378 |
| DS01 | -2.057 | -6.0 |
| DS02 | -2.05 | -6.0 |
| DS04 | -1.376 | -3.847 |
| DS0c | -1.966 | -5.276 |
| GP01 | 1.966 | -1.875 |
| GP02 | 0.94 | -2.344 |
| GP0c | 0.491 | -1.179 |
| NOD | 2.93 | 0.153 |
| NZO | -3.112 | -6.0 |
| PWK | -0.155 | -4.825 |
| H37Rv_KO_CtpC | -0.634 | -1.587 |
| H37Rv_KO_CtpD | 0.252 | -1.102 |
| H37Rv_KO_Rv1272 | 0.989 | -1.097 |
| H37Rv_KO_SugABC | -1.651 | -2.464 |
| H37Rv_KO_MbtN | 1.625 | 0.817 |
| Trans05 | -0.31 | -0.72 |
| macrophage_unactivated | 1.146 | -0.218 |
| IL1 | 0.151 | -0.148 |
| Rapamycin | -0.08 | -0.672 |
| Tcell | 1.906 | -1.235 |
| GMCSF | -1.682 | 0.016 |
| IFNab | 0.514 | 1.128 |
| IFNg | -0.286 | -1.098 |
| IFNg_GMCSF1 | 0.462 | 0.682 |
| Rv1432_day32 | -0.244 | -1.13 |
| Rv1565c_day32 | -0.706 | -3.097 |
| secA2_input | 0.615 | -0.873 |
| delta_Rv3594 | -0.776 | 0.242 |
| delta_Rv3717 | -0.176 | -0.596 |
| delta_Rv3811 | 0.431 | -0.433 |
| delta_Rv0954 | -0.655 | -0.437 |
| PonA1 | -1.654 | -1.641 |
| EccD1_KO | 1.76 | 0.572 |
| EspI_KO | 0.439 | 1.514 |
| PE35_KO | 2.333 | 1.082 |
| PPE68_KO | 1.677 | 1.222 |
| glycerol2 | 0.876 | 1.184 |
| lignocerate | -0.149 | 0.6 |
| oleate | 1.394 | 1.136 |
| phosphatidylcholine | 0.84 | 0.262 |
| acetate | -1.536 | -0.153 |
| glucAc | -1.721 | -0.228 |
| Rv0950ko | 1.595 | 0.485 |
| Rv1096ko | 0.262 | -0.6 |
| Rv3684ko | -0.406 | -0.766 |
| delta_otsA_trehalose | 0.28 | 0.89 |