Top 10 genes with highest correlation to Rv3829c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3108/- | (cc=0.5668) | info on Rv3108/- |
| Rv1946c/lppG | (cc=0.545) | info on Rv1946c/lppG |
| Rv3398c/idsA1 | (cc=0.5255) | info on Rv3398c/idsA1 |
| Rv0844c/narL | (cc=0.5092) | info on Rv0844c/narL |
| Rv2452c/- | (cc=0.5074) | info on Rv2452c/- |
| Rv2807/- | (cc=0.4958) | info on Rv2807/- |
| Rv2428/ahpC | (cc=0.4923) | info on Rv2428/ahpC |
| Rv2070c/cobK | (cc=0.4855) | info on Rv2070c/cobK |
| Rv3166c/- | (cc=0.4773) | info on Rv3166c/- |
| Rv1962A/vapB35 | (cc=0.4712) | info on Rv1962A/vapB35 |
Correlation of Rv3829c/- with Rv3108/-
Normalized LFCs for Rv3829c/-:
(description and provenance of datasets)
| Rv3829c/- | Rv3108/- | |
| Fe_supp_jason_reseq | -0.511 | -1.688 |
| low_pH_jason_reseq | 0.555 | -0.527 |
| NO_jason_reseq | -0.27 | -1.449 |
| B6_jason_reseq | -1.185 | -3.642 |
| MHCII_jason_reseq | -0.647 | -3.207 |
| Isoniazid02 | -0.31 | -2.722 |
| Rifampicin4 | -0.523 | 0.143 |
| Ethambutol3 | -0.102 | -2.754 |
| Meropenem3 | 0.125 | -2.074 |
| Vancomycin16 | -0.072 | -0.804 |
| Rv2680_day32 | 0.917 | 1.988 |
| H37Rv_KO_MarP | 0.27 | -0.974 |
| hypoxia_3wks | -0.419 | -1.232 |
| hypoxia_6wks | -0.737 | -1.142 |
| glycerol | 0.336 | -0.781 |
| cholesterol | -0.012 | 4.538 |
| AJ | 0.113 | -1.356 |
| Bibs02 | -0.907 | -2.742 |
| Bibs02c | -0.161 | -1.516 |
| BL6 | 0.639 | 0.031 |
| BL6a | 0.288 | 0.595 |
| BXD01 | 0.542 | 0.96 |
| BXD010 | 0.608 | 0.361 |
| BXD011 | 0.34 | 0.258 |
| BXD03 | 0.378 | 2.155 |
| BXD04 | 0.534 | 1.291 |
| BXD05 | -0.033 | 0.065 |
| BXD06 | 0.398 | 0.588 |
| BXD07 | 0.361 | 0.467 |
| BXD08 | 0.725 | -0.214 |
| BXD09 | 0.225 | 0.619 |
| CAST | -0.39 | -0.179 |
| CCcont | 0.446 | 0.037 |
| DS01 | -0.332 | -1.487 |
| DS02 | 0.254 | -1.47 |
| DS04 | -0.547 | -0.551 |
| DS0c | 0.071 | 0.105 |
| GP01 | 0.313 | -1.481 |
| GP02 | 0.762 | -1.165 |
| GP0c | -0.438 | -1.95 |
| NOD | 0.643 | -0.869 |
| NZO | -0.189 | -2.146 |
| PWK | -0.729 | -0.831 |
| H37Rv_KO_CtpC | 0.282 | 0.079 |
| H37Rv_KO_CtpD | 1.268 | 2.216 |
| H37Rv_KO_Rv1272 | 0.713 | -0.447 |
| H37Rv_KO_SugABC | 0.807 | 0.614 |
| H37Rv_KO_MbtN | 0.201 | 1.659 |
| Trans05 | 0.255 | -0.415 |
| macrophage_unactivated | 0.47 | -1.121 |
| IL1 | 0.605 | 0.908 |
| Rapamycin | 0.218 | -0.335 |
| Tcell | 0.362 | 1.329 |
| GMCSF | 1.117 | -0.766 |
| IFNab | 0.726 | 1.113 |
| IFNg | 0.593 | 0.462 |
| IFNg_GMCSF1 | 0.097 | -0.167 |
| Rv1432_day32 | 0.387 | 0.18 |
| Rv1565c_day32 | 0.441 | 0.637 |
| secA2_input | 0.313 | 2.052 |
| delta_Rv3594 | -0.381 | -0.133 |
| delta_Rv3717 | -0.58 | 1.051 |
| delta_Rv3811 | 0.22 | 1.194 |
| delta_Rv0954 | 0.013 | -2.16 |
| PonA1 | 0.149 | 0.404 |
| EccD1_KO | 1.207 | 2.361 |
| EspI_KO | 1.149 | -0.134 |
| PE35_KO | 1.254 | 2.094 |
| PPE68_KO | 1.318 | 1.51 |
| glycerol2 | -0.441 | -2.413 |
| lignocerate | -0.106 | -1.218 |
| oleate | -0.225 | -0.301 |
| phosphatidylcholine | -0.409 | -1.401 |
| acetate | -0.447 | -1.662 |
| glucAc | -0.338 | -1.572 |
| Rv0950ko | -0.347 | 0.259 |
| Rv1096ko | 0.205 | 1.674 |
| Rv3684ko | -0.236 | 0.19 |
| delta_otsA_trehalose | -0.033 | -0.599 |