TnSeqCorr

Top 10 genes with highest correlation to Rv3824c/papA1:

update plotcorrelationlink to info on gene
Rv3820c/papA2 (cc=0.6907) info on Rv3820c/papA2
Rv3825c/pks2 (cc=0.6858) info on Rv3825c/pks2
Rv3826/fadD23 (cc=0.5764) info on Rv3826/fadD23
Rv0356c/- (cc=0.5479) info on Rv0356c/-
Rv2709/- (cc=0.5137) info on Rv2709/-
Rv3018c/PPE46 (cc=0.4955) info on Rv3018c/PPE46
Rv0643c/mmaA3 (cc=0.4829) info on Rv0643c/mmaA3
Rv1239c/corA (cc=0.474) info on Rv1239c/corA
Rv3380c/- (cc=0.4708) info on Rv3380c/-
Rv3419c/gcp (cc=0.465) info on Rv3419c/gcp

Correlation of Rv3824c/papA1 with Rv3820c/papA2

Normalized LFCs for Rv3824c/papA1:
(description and provenance of datasets)
Rv3824c/papA1Rv3820c/papA2
Fe_supp_jason_reseq

-0.123

-1.119

low_pH_jason_reseq

0.77

0.01

NO_jason_reseq

0.885

-0.102

B6_jason_reseq

0.685

0.083

MHCII_jason_reseq

0.637

0.199

Isoniazid02

-0.688

-0.486

Rifampicin4

0.609

0.59

Ethambutol3

1.183

1.216

Meropenem3

-0.202

0.22

Vancomycin16

0.74

0.854

Rv2680_day32

-0.197

-0.194

H37Rv_KO_MarP

0.442

0.564

hypoxia_3wks

-0.925

-0.706

hypoxia_6wks

-0.125

-0.161

glycerol

1.135

0.654

cholesterol

-0.541

-0.982

AJ

0.513

0.054

Bibs02

-0.077

0.032

Bibs02c

-0.149

0.527

BL6

0.919

-0.069

BL6a

0.438

0.676

BXD01

-0.254

-0.056

BXD010

0.093

-0.031

BXD011

0.216

0.279

BXD03

0.407

0.085

BXD04

0.128

0.591

BXD05

0.363

0.32

BXD06

0.265

0.046

BXD07

0.143

0.178

BXD08

0.279

0.031

BXD09

-0.11

-0.244

CAST

0.971

0.844

CCcont

0.338

0.136

DS01

0.171

-0.267

DS02

-0.285

-0.536

DS04

-0.122

-0.493

DS0c

-0.423

-0.393

GP01

0.481

-0.504

GP02

-0.017

-0.441

GP0c

0.127

-0.741

NOD

0.329

0.091

NZO

0.61

-0.251

PWK

1.421

0.877

H37Rv_KO_CtpC

0.625

-0.059

H37Rv_KO_CtpD

1.703

1.434

H37Rv_KO_Rv1272

0.632

0.862

H37Rv_KO_SugABC

0.033

-0.172

H37Rv_KO_MbtN

0.439

0.432

Trans05

0.508

0.755

macrophage_unactivated

-1.408

-0.675

IL1

-0.599

-0.267

Rapamycin

-1.31

-0.743

Tcell

-1.421

-0.916

GMCSF

0.161

-1.117

IFNab

-0.937

-0.85

IFNg

-0.412

-0.647

IFNg_GMCSF1

-1.37

-1.364

Rv1432_day32

-0.368

0.755

Rv1565c_day32

-1.234

-0.03

secA2_input

-0.124

-0.333

delta_Rv3594

-0.128

-0.34

delta_Rv3717

-0.581

-1.085

delta_Rv3811

0.291

-0.738

delta_Rv0954

0.452

-0.942

PonA1

0.476

0.085

EccD1_KO

-0.714

-0.881

EspI_KO

-0.676

-1.295

PE35_KO

0.248

0.216

PPE68_KO

-0.083

-0.41

glycerol2

-0.118

0.167

lignocerate

0.682

0.609

oleate

-0.637

0.067

phosphatidylcholine

-1.448

-1.225

acetate

0.276

0.251

glucAc

0.239

0.162

Rv0950ko

-0.06

0.431

Rv1096ko

-1.152

-1.191

Rv3684ko

-0.914

-0.393

delta_otsA_trehalose

0.442

1.611