Top 10 genes with highest correlation to Rv3807c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0541c/- | (cc=0.5901) | info on Rv0541c/- |
| Rv1512/epiA | (cc=0.5811) | info on Rv1512/epiA |
| Rv0998/- | (cc=0.555) | info on Rv0998/- |
| Rv1421/- | (cc=0.5326) | info on Rv1421/- |
| Rv0092/ctpA | (cc=0.5248) | info on Rv0092/ctpA |
| Rv3918c/parA | (cc=0.4916) | info on Rv3918c/parA |
| Rv0545c/pitA | (cc=0.4876) | info on Rv0545c/pitA |
| Rv2036/- | (cc=0.4866) | info on Rv2036/- |
| Rv1080c/greA | (cc=0.4743) | info on Rv1080c/greA |
| Rv2246/kasB | (cc=0.4734) | info on Rv2246/kasB |
Correlation of Rv3807c/- with Rv0545c/pitA
Normalized LFCs for Rv3807c/-:
(description and provenance of datasets)
| Rv3807c/- | Rv0545c/pitA | |
| Fe_supp_jason_reseq | 3.017 | -1.323 |
| low_pH_jason_reseq | -1.79 | -1.251 |
| NO_jason_reseq | 0.176 | -0.281 |
| B6_jason_reseq | 1.071 | -1.496 |
| MHCII_jason_reseq | 0.977 | -2.253 |
| Isoniazid02 | 0.642 | 0.327 |
| Rifampicin4 | -0.29 | 1.852 |
| Ethambutol3 | 0.711 | 2.309 |
| Meropenem3 | -0.128 | -0.543 |
| Vancomycin16 | -0.589 | 1.51 |
| Rv2680_day32 | 1.294 | 1.535 |
| H37Rv_KO_MarP | -1.699 | -0.409 |
| hypoxia_3wks | 2.265 | 2.536 |
| hypoxia_6wks | 1.391 | 2.297 |
| glycerol | -1.729 | 1.556 |
| cholesterol | -1.715 | 1.387 |
| AJ | -2.284 | -1.913 |
| Bibs02 | 2.215 | -1.24 |
| Bibs02c | -0.318 | -0.988 |
| BL6 | -1.706 | 0.058 |
| BL6a | -0.222 | -0.047 |
| BXD01 | -1.694 | 0.744 |
| BXD010 | 0.229 | 0.502 |
| BXD011 | -2.236 | 0.997 |
| BXD03 | -1.678 | 0.031 |
| BXD04 | -1.335 | 0.968 |
| BXD05 | 0.374 | 1.082 |
| BXD06 | -1.509 | 0.523 |
| BXD07 | -0.36 | 0.953 |
| BXD08 | -1.999 | 0.408 |
| BXD09 | -0.365 | 0.406 |
| CAST | -2.486 | -1.668 |
| CCcont | -1.279 | 1.485 |
| DS01 | -0.265 | -1.116 |
| DS02 | 0.663 | -0.654 |
| DS04 | -0.461 | -0.645 |
| DS0c | 1.263 | -1.904 |
| GP01 | 2.895 | 1.292 |
| GP02 | 0.889 | 0.797 |
| GP0c | 1.86 | 1.451 |
| NOD | -2.211 | -2.232 |
| NZO | -1.211 | -1.982 |
| PWK | -2.676 | -2.347 |
| H37Rv_KO_CtpC | -1.837 | 0.554 |
| H37Rv_KO_CtpD | -1.728 | -0.094 |
| H37Rv_KO_Rv1272 | -0.466 | -0.296 |
| H37Rv_KO_SugABC | -1.649 | 0.466 |
| H37Rv_KO_MbtN | 0.931 | 2.907 |
| Trans05 | 0.327 | 0.228 |
| macrophage_unactivated | -0.855 | 0.167 |
| IL1 | -2.394 | -2.966 |
| Rapamycin | -1.488 | -2.547 |
| Tcell | -1.219 | -1.274 |
| GMCSF | -1.133 | -1.096 |
| IFNab | 2.833 | 0.656 |
| IFNg | 0.609 | -1.515 |
| IFNg_GMCSF1 | -3.274 | -2.316 |
| Rv1432_day32 | -0.819 | 1.248 |
| Rv1565c_day32 | 0.0 | -1.767 |
| secA2_input | -1.061 | 0.235 |
| delta_Rv3594 | 3.295 | 3.341 |
| delta_Rv3717 | 3.809 | 2.665 |
| delta_Rv3811 | 5.154 | 2.822 |
| delta_Rv0954 | 3.545 | 0.811 |
| PonA1 | -1.154 | -1.154 |
| EccD1_KO | -1.151 | -1.697 |
| EspI_KO | -2.667 | -0.094 |
| PE35_KO | -2.981 | -1.835 |
| PPE68_KO | -2.857 | -2.013 |
| glycerol2 | -2.008 | -0.964 |
| lignocerate | -1.745 | -1.28 |
| oleate | -2.032 | -1.49 |
| phosphatidylcholine | -2.007 | -2.053 |
| acetate | -0.384 | 0.831 |
| glucAc | -1.481 | 0.099 |
| Rv0950ko | -2.268 | -0.193 |
| Rv1096ko | -2.045 | 0.32 |
| Rv3684ko | -0.547 | 0.393 |
| delta_otsA_trehalose | 0.366 | -0.671 |