Top 10 genes with highest correlation to Rv3807c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0541c/- | (cc=0.5901) | info on Rv0541c/- |
| Rv1512/epiA | (cc=0.5811) | info on Rv1512/epiA |
| Rv0998/- | (cc=0.555) | info on Rv0998/- |
| Rv1421/- | (cc=0.5326) | info on Rv1421/- |
| Rv0092/ctpA | (cc=0.5248) | info on Rv0092/ctpA |
| Rv3918c/parA | (cc=0.4916) | info on Rv3918c/parA |
| Rv0545c/pitA | (cc=0.4876) | info on Rv0545c/pitA |
| Rv2036/- | (cc=0.4866) | info on Rv2036/- |
| Rv1080c/greA | (cc=0.4743) | info on Rv1080c/greA |
| Rv2246/kasB | (cc=0.4734) | info on Rv2246/kasB |
Correlation of Rv3807c/- with Rv0092/ctpA
Normalized LFCs for Rv3807c/-:
(description and provenance of datasets)
| Rv3807c/- | Rv0092/ctpA | |
| Fe_supp_jason_reseq | 3.017 | 0.685 |
| low_pH_jason_reseq | -1.79 | 0.935 |
| NO_jason_reseq | 0.176 | -0.811 |
| B6_jason_reseq | 1.071 | 0.055 |
| MHCII_jason_reseq | 0.977 | 1.05 |
| Isoniazid02 | 0.642 | -0.824 |
| Rifampicin4 | -0.29 | -0.317 |
| Ethambutol3 | 0.711 | 0.313 |
| Meropenem3 | -0.128 | 1.388 |
| Vancomycin16 | -0.589 | -0.204 |
| Rv2680_day32 | 1.294 | 1.177 |
| H37Rv_KO_MarP | -1.699 | -0.295 |
| hypoxia_3wks | 2.265 | 0.849 |
| hypoxia_6wks | 1.391 | -1.222 |
| glycerol | -1.729 | 0.439 |
| cholesterol | -1.715 | -0.466 |
| AJ | -2.284 | -1.045 |
| Bibs02 | 2.215 | 0.714 |
| Bibs02c | -0.318 | 0.018 |
| BL6 | -1.706 | -1.138 |
| BL6a | -0.222 | -0.567 |
| BXD01 | -1.694 | -1.158 |
| BXD010 | 0.229 | -1.01 |
| BXD011 | -2.236 | -1.159 |
| BXD03 | -1.678 | -1.665 |
| BXD04 | -1.335 | -0.929 |
| BXD05 | 0.374 | -1.062 |
| BXD06 | -1.509 | -0.955 |
| BXD07 | -0.36 | -0.723 |
| BXD08 | -1.999 | -1.391 |
| BXD09 | -0.365 | -0.776 |
| CAST | -2.486 | -1.136 |
| CCcont | -1.279 | -0.757 |
| DS01 | -0.265 | -0.676 |
| DS02 | 0.663 | -0.622 |
| DS04 | -0.461 | 0.101 |
| DS0c | 1.263 | -0.267 |
| GP01 | 2.895 | -0.655 |
| GP02 | 0.889 | -0.672 |
| GP0c | 1.86 | -0.718 |
| NOD | -2.211 | -1.53 |
| NZO | -1.211 | -1.257 |
| PWK | -2.676 | -0.384 |
| H37Rv_KO_CtpC | -1.837 | 0.353 |
| H37Rv_KO_CtpD | -1.728 | 0.17 |
| H37Rv_KO_Rv1272 | -0.466 | -0.889 |
| H37Rv_KO_SugABC | -1.649 | -0.461 |
| H37Rv_KO_MbtN | 0.931 | 0.289 |
| Trans05 | 0.327 | -0.024 |
| macrophage_unactivated | -0.855 | -0.407 |
| IL1 | -2.394 | -0.383 |
| Rapamycin | -1.488 | -0.064 |
| Tcell | -1.219 | 0.134 |
| GMCSF | -1.133 | -0.401 |
| IFNab | 2.833 | -0.895 |
| IFNg | 0.609 | -0.724 |
| IFNg_GMCSF1 | -3.274 | -0.478 |
| Rv1432_day32 | -0.819 | 0.703 |
| Rv1565c_day32 | 0.0 | -0.599 |
| secA2_input | -1.061 | 1.171 |
| delta_Rv3594 | 3.295 | 0.802 |
| delta_Rv3717 | 3.809 | 1.742 |
| delta_Rv3811 | 5.154 | 1.142 |
| delta_Rv0954 | 3.545 | 0.85 |
| PonA1 | -1.154 | -1.437 |
| EccD1_KO | -1.151 | -1.74 |
| EspI_KO | -2.667 | -1.668 |
| PE35_KO | -2.981 | -0.858 |
| PPE68_KO | -2.857 | -1.693 |
| glycerol2 | -2.008 | -1.379 |
| lignocerate | -1.745 | -1.679 |
| oleate | -2.032 | -2.813 |
| phosphatidylcholine | -2.007 | -2.112 |
| acetate | -0.384 | -0.191 |
| glucAc | -1.481 | -0.067 |
| Rv0950ko | -2.268 | -1.182 |
| Rv1096ko | -2.045 | -1.393 |
| Rv3684ko | -0.547 | -1.284 |
| delta_otsA_trehalose | 0.366 | 1.743 |