Top 10 genes with highest correlation to Rv3794/embA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1491c/- | (cc=0.6065) | info on Rv1491c/- |
| Rv1111c/- | (cc=0.5803) | info on Rv1111c/- |
| Rv3818/- | (cc=0.5657) | info on Rv3818/- |
| Rv1411c/lprG | (cc=0.5495) | info on Rv1411c/lprG |
| Rv0050/ponA1 | (cc=0.5422) | info on Rv0050/ponA1 |
| Rv2584c/apt | (cc=0.5243) | info on Rv2584c/apt |
| Rv3267/- | (cc=0.5198) | info on Rv3267/- |
| Rv0642c/mmaA4 | (cc=0.507) | info on Rv0642c/mmaA4 |
| Rv2190c/- | (cc=0.4959) | info on Rv2190c/- |
| Rv3150/nuoF | (cc=0.4926) | info on Rv3150/nuoF |
Correlation of Rv3794/embA with Rv3818/-
Normalized LFCs for Rv3794/embA:
(description and provenance of datasets)
| Rv3794/embA | Rv3818/- | |
| Fe_supp_jason_reseq | -0.169 | -0.103 |
| low_pH_jason_reseq | -0.371 | -1.643 |
| NO_jason_reseq | 0.263 | -0.121 |
| B6_jason_reseq | -0.119 | -3.085 |
| MHCII_jason_reseq | -0.474 | -2.252 |
| Isoniazid02 | 0.469 | 1.234 |
| Rifampicin4 | -1.465 | -3.579 |
| Ethambutol3 | -0.824 | 0.377 |
| Meropenem3 | -0.648 | -0.771 |
| Vancomycin16 | -1.799 | -3.321 |
| Rv2680_day32 | -0.131 | 0.796 |
| H37Rv_KO_MarP | -0.886 | -2.515 |
| hypoxia_3wks | 1.483 | 2.592 |
| hypoxia_6wks | 0.171 | 2.946 |
| glycerol | -0.202 | -0.791 |
| cholesterol | 0.132 | 0.645 |
| AJ | -0.232 | -1.837 |
| Bibs02 | -0.183 | 0.474 |
| Bibs02c | -0.209 | 0.067 |
| BL6 | -0.125 | 1.975 |
| BL6a | 0.499 | 1.897 |
| BXD01 | 0.0 | 1.939 |
| BXD010 | 0.502 | 3.057 |
| BXD011 | 0.222 | 2.413 |
| BXD03 | 1.464 | 3.807 |
| BXD04 | 0.485 | 2.431 |
| BXD05 | 0.436 | 2.693 |
| BXD06 | 0.432 | 2.991 |
| BXD07 | 0.543 | 2.302 |
| BXD08 | 0.121 | 1.691 |
| BXD09 | 0.245 | 2.345 |
| CAST | 0.0 | -0.794 |
| CCcont | 0.0 | 3.269 |
| DS01 | -0.236 | 0.842 |
| DS02 | -0.217 | -0.072 |
| DS04 | -0.194 | 2.485 |
| DS0c | -0.217 | 0.966 |
| GP01 | 0.09 | 0.747 |
| GP02 | -0.083 | 0.829 |
| GP0c | 1.408 | 1.295 |
| NOD | -0.225 | -0.88 |
| NZO | -0.199 | -1.087 |
| PWK | -0.196 | -0.132 |
| H37Rv_KO_CtpC | 0.41 | 2.081 |
| H37Rv_KO_CtpD | 1.033 | 1.548 |
| H37Rv_KO_Rv1272 | -0.141 | 1.572 |
| H37Rv_KO_SugABC | -0.099 | 1.297 |
| H37Rv_KO_MbtN | 0.0 | 4.543 |
| Trans05 | 0.0 | 2.32 |
| macrophage_unactivated | 0.246 | 0.739 |
| IL1 | 1.231 | -0.341 |
| Rapamycin | 0.239 | 0.095 |
| Tcell | 0.0 | 0.443 |
| GMCSF | -0.217 | 0.51 |
| IFNab | 1.605 | 1.59 |
| IFNg | 0.208 | 1.114 |
| IFNg_GMCSF1 | 0.245 | -0.641 |
| Rv1432_day32 | 0.0 | 2.214 |
| Rv1565c_day32 | 0.0 | 0.218 |
| secA2_input | -0.47 | -1.506 |
| delta_Rv3594 | 1.205 | 0.017 |
| delta_Rv3717 | 0.563 | 1.251 |
| delta_Rv3811 | -0.1 | 0.858 |
| delta_Rv0954 | -0.481 | -2.768 |
| PonA1 | -1.313 | -0.682 |
| EccD1_KO | 0.0 | -0.826 |
| EspI_KO | -0.87 | -0.245 |
| PE35_KO | -1.415 | 0.324 |
| PPE68_KO | -1.254 | -0.275 |
| glycerol2 | -0.177 | -0.738 |
| lignocerate | -0.32 | -1.76 |
| oleate | -0.179 | -0.364 |
| phosphatidylcholine | -0.368 | -2.681 |
| acetate | -0.209 | 0.188 |
| glucAc | -0.272 | 0.06 |
| Rv0950ko | -0.262 | -1.426 |
| Rv1096ko | -0.546 | -0.434 |
| Rv3684ko | -0.917 | -0.472 |
| delta_otsA_trehalose | -0.111 | -1.157 |