Top 10 genes with highest correlation to Rv3794/embA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1491c/- | (cc=0.6065) | info on Rv1491c/- |
| Rv1111c/- | (cc=0.5803) | info on Rv1111c/- |
| Rv3818/- | (cc=0.5657) | info on Rv3818/- |
| Rv1411c/lprG | (cc=0.5495) | info on Rv1411c/lprG |
| Rv0050/ponA1 | (cc=0.5422) | info on Rv0050/ponA1 |
| Rv2584c/apt | (cc=0.5243) | info on Rv2584c/apt |
| Rv3267/- | (cc=0.5198) | info on Rv3267/- |
| Rv0642c/mmaA4 | (cc=0.507) | info on Rv0642c/mmaA4 |
| Rv2190c/- | (cc=0.4959) | info on Rv2190c/- |
| Rv3150/nuoF | (cc=0.4926) | info on Rv3150/nuoF |
Correlation of Rv3794/embA with Rv0050/ponA1
Normalized LFCs for Rv3794/embA:
(description and provenance of datasets)
| Rv3794/embA | Rv0050/ponA1 | |
| Fe_supp_jason_reseq | -0.169 | 0.508 |
| low_pH_jason_reseq | -0.371 | 0.192 |
| NO_jason_reseq | 0.263 | -0.16 |
| B6_jason_reseq | -0.119 | 0.777 |
| MHCII_jason_reseq | -0.474 | 0.058 |
| Isoniazid02 | 0.469 | -1.202 |
| Rifampicin4 | -1.465 | -1.156 |
| Ethambutol3 | -0.824 | -0.711 |
| Meropenem3 | -0.648 | -0.237 |
| Vancomycin16 | -1.799 | -4.51 |
| Rv2680_day32 | -0.131 | 0.058 |
| H37Rv_KO_MarP | -0.886 | -3.768 |
| hypoxia_3wks | 1.483 | -0.443 |
| hypoxia_6wks | 0.171 | -1.059 |
| glycerol | -0.202 | -0.146 |
| cholesterol | 0.132 | 0.398 |
| AJ | -0.232 | -0.644 |
| Bibs02 | -0.183 | -1.597 |
| Bibs02c | -0.209 | -0.399 |
| BL6 | -0.125 | 0.47 |
| BL6a | 0.499 | 0.319 |
| BXD01 | 0.0 | 0.322 |
| BXD010 | 0.502 | 0.316 |
| BXD011 | 0.222 | 0.966 |
| BXD03 | 1.464 | 0.604 |
| BXD04 | 0.485 | 0.634 |
| BXD05 | 0.436 | 0.877 |
| BXD06 | 0.432 | 0.33 |
| BXD07 | 0.543 | 0.452 |
| BXD08 | 0.121 | 1.558 |
| BXD09 | 0.245 | 0.69 |
| CAST | 0.0 | -0.439 |
| CCcont | 0.0 | 1.278 |
| DS01 | -0.236 | -0.084 |
| DS02 | -0.217 | -0.704 |
| DS04 | -0.194 | -0.453 |
| DS0c | -0.217 | 0.652 |
| GP01 | 0.09 | 0.396 |
| GP02 | -0.083 | 1.958 |
| GP0c | 1.408 | 1.151 |
| NOD | -0.225 | -0.428 |
| NZO | -0.199 | -0.553 |
| PWK | -0.196 | -0.831 |
| H37Rv_KO_CtpC | 0.41 | 0.213 |
| H37Rv_KO_CtpD | 1.033 | 0.566 |
| H37Rv_KO_Rv1272 | -0.141 | 0.048 |
| H37Rv_KO_SugABC | -0.099 | 1.16 |
| H37Rv_KO_MbtN | 0.0 | 0.484 |
| Trans05 | 0.0 | 0.249 |
| macrophage_unactivated | 0.246 | 0.65 |
| IL1 | 1.231 | 0.418 |
| Rapamycin | 0.239 | 1.188 |
| Tcell | 0.0 | 0.459 |
| GMCSF | -0.217 | 0.283 |
| IFNab | 1.605 | 0.72 |
| IFNg | 0.208 | 0.551 |
| IFNg_GMCSF1 | 0.245 | 0.748 |
| Rv1432_day32 | 0.0 | -1.068 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | -0.47 | -0.47 |
| delta_Rv3594 | 1.205 | 0.179 |
| delta_Rv3717 | 0.563 | -0.799 |
| delta_Rv3811 | -0.1 | 0.107 |
| delta_Rv0954 | -0.481 | -1.601 |
| PonA1 | -1.313 | -2.956 |
| EccD1_KO | 0.0 | -0.661 |
| EspI_KO | -0.87 | -0.761 |
| PE35_KO | -1.415 | -1.817 |
| PPE68_KO | -1.254 | -0.442 |
| glycerol2 | -0.177 | -1.582 |
| lignocerate | -0.32 | -1.61 |
| oleate | -0.179 | -1.733 |
| phosphatidylcholine | -0.368 | -2.001 |
| acetate | -0.209 | -0.291 |
| glucAc | -0.272 | -0.088 |
| Rv0950ko | -0.262 | -0.305 |
| Rv1096ko | -0.546 | -0.151 |
| Rv3684ko | -0.917 | 0.809 |
| delta_otsA_trehalose | -0.111 | 0.564 |