TnSeqCorr

Top 10 genes with highest correlation to Rv3753c/-:

update plotcorrelationlink to info on gene
Rv3673c/- (cc=0.8014) info on Rv3673c/-
Rv2678c/hemE (cc=0.7829) info on Rv2678c/hemE
Rv3858c/gltD (cc=0.6941) info on Rv3858c/gltD
Rv3670/ephE (cc=0.6718) info on Rv3670/ephE
Rv0701/rplC (cc=0.6627) info on Rv0701/rplC
Rv3489/- (cc=0.6376) info on Rv3489/-
Rv2373c/dnaJ2 (cc=0.6353) info on Rv2373c/dnaJ2
Rv2882c/frr (cc=0.6341) info on Rv2882c/frr
Rv0541c/- (cc=0.6084) info on Rv0541c/-
Rv2611c/- (cc=0.6051) info on Rv2611c/-

Correlation of Rv3753c/- with Rv3673c/-

Normalized LFCs for Rv3753c/-:
(description and provenance of datasets)
Rv3753c/-Rv3673c/-
Fe_supp_jason_reseq

1.778

0.0

low_pH_jason_reseq

0.582

0.0

NO_jason_reseq

-0.362

0.0

B6_jason_reseq

-0.153

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

0.0

0.0

Rifampicin4

0.0

0.0

Ethambutol3

0.0

0.0

Meropenem3

0.0

0.0

Vancomycin16

0.0

0.0

Rv2680_day32

0.0

0.0

H37Rv_KO_MarP

-0.255

0.0

hypoxia_3wks

0.0

0.0

hypoxia_6wks

0.0

0.0

glycerol

0.0

0.0

cholesterol

0.0

0.0

AJ

0.0

0.0

Bibs02

0.0

0.0

Bibs02c

0.0

0.0

BL6

0.0

0.0

BL6a

0.0

0.0

BXD01

0.0

0.0

BXD010

0.0

0.0

BXD011

0.243

0.0

BXD03

0.0

0.0

BXD04

1.619

0.0

BXD05

0.0

0.0

BXD06

0.0

0.0

BXD07

0.0

0.0

BXD08

0.0

0.0

BXD09

0.0

0.0

CAST

0.0

0.0

CCcont

0.0

0.0

DS01

0.0

0.0

DS02

0.0

0.0

DS04

0.0

0.0

DS0c

0.0

0.0

GP01

0.0

0.0

GP02

0.0

0.0

GP0c

0.0

0.0

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.0

0.0

H37Rv_KO_CtpD

0.127

0.0

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.0

0.0

H37Rv_KO_MbtN

0.0

0.0

Trans05

0.0

0.0

macrophage_unactivated

-0.436

0.0

IL1

-0.409

0.0

Rapamycin

-0.424

0.0

Tcell

-0.45

0.0

GMCSF

-0.364

0.0

IFNab

0.729

0.0

IFNg

0.644

0.0

IFNg_GMCSF1

-0.434

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

-0.766

0.0

secA2_input

-0.216

0.593

delta_Rv3594

-0.369

0.0

delta_Rv3717

0.955

0.0

delta_Rv3811

0.697

0.0

delta_Rv0954

-0.149

0.0

PonA1

-0.278

0.0

EccD1_KO

-3.667

-1.595

EspI_KO

-2.264

-1.383

PE35_KO

-2.917

-1.415

PPE68_KO

-1.213

-0.71

glycerol2

0.0

0.0

lignocerate

0.0

0.0

oleate

0.0

0.0

phosphatidylcholine

0.0

0.0

acetate

0.0

0.0

glucAc

0.0

0.0

Rv0950ko

0.0

0.0

Rv1096ko

0.0

0.0

Rv3684ko

1.14

0.0

delta_otsA_trehalose

0.0

0.0