TnSeqCorr

Top 10 genes with highest correlation to Rv3749c/-:

update plotcorrelationlink to info on gene
Rv2287/yjcE (cc=0.8532) info on Rv2287/yjcE
Rv1913/- (cc=0.8224) info on Rv1913/-
Rv0293c/- (cc=0.7675) info on Rv0293c/-
Rv1356c/- (cc=0.7432) info on Rv1356c/-
Rv0182c/sigG (cc=0.7014) info on Rv0182c/sigG
Rv3812/PE_PGRS62 (cc=0.6826) info on Rv3812/PE_PGRS62
Rv2668/- (cc=0.6646) info on Rv2668/-
Rv0187/- (cc=0.6288) info on Rv0187/-
Rv3697c/vapC48 (cc=0.6188) info on Rv3697c/vapC48
Rv1366/- (cc=0.6056) info on Rv1366/-

Correlation of Rv3749c/- with Rv2668/-

Normalized LFCs for Rv3749c/-:
(description and provenance of datasets)
Rv3749c/-Rv2668/-
Fe_supp_jason_reseq

0.253

-1.182

low_pH_jason_reseq

-0.602

-0.391

NO_jason_reseq

0.026

0.076

B6_jason_reseq

0.466

-0.461

MHCII_jason_reseq

0.688

-1.006

Isoniazid02

-0.227

0.349

Rifampicin4

0.062

0.804

Ethambutol3

0.136

0.773

Meropenem3

-0.904

-0.295

Vancomycin16

-0.464

0.788

Rv2680_day32

-0.008

-1.115

H37Rv_KO_MarP

0.429

0.127

hypoxia_3wks

-0.1

-0.231

hypoxia_6wks

-0.098

-0.428

glycerol

-2.336

1.096

cholesterol

-1.456

-1.433

AJ

0.225

0.182

Bibs02

-0.535

-0.119

Bibs02c

0.779

-1.234

BL6

-0.411

0.61

BL6a

0.532

-0.11

BXD01

-0.171

-0.44

BXD010

0.558

-0.62

BXD011

-0.294

0.141

BXD03

-0.054

0.193

BXD04

-0.348

-0.057

BXD05

0.359

0.57

BXD06

-0.489

-0.087

BXD07

-0.021

-0.103

BXD08

-0.206

0.221

BXD09

-0.101

0.074

CAST

0.354

-1.587

CCcont

-0.373

0.77

DS01

-0.101

-1.11

DS02

-0.487

0.882

DS04

-0.521

0.135

DS0c

0.193

-0.336

GP01

1.065

-2.044

GP02

-0.271

-1.017

GP0c

-0.257

-0.767

NOD

0.716

-0.703

NZO

0.077

-1.445

PWK

0.175

-0.787

H37Rv_KO_CtpC

-0.755

-0.548

H37Rv_KO_CtpD

-0.643

-2.086

H37Rv_KO_Rv1272

-0.229

-0.234

H37Rv_KO_SugABC

-0.009

-1.183

H37Rv_KO_MbtN

-1.433

-0.675

Trans05

-0.542

-0.834

macrophage_unactivated

-1.386

-0.129

IL1

-5.09

-1.498

Rapamycin

-4.944

-3.069

Tcell

2.366

3.982

GMCSF

-4.267

-4.399

IFNab

-4.734

-4.577

IFNg

-4.479

-4.22

IFNg_GMCSF1

-5.144

-5.442

Rv1432_day32

0.077

-1.156

Rv1565c_day32

0.18

-1.93

secA2_input

-0.941

0.64

delta_Rv3594

-0.393

-0.572

delta_Rv3717

-0.339

-1.062

delta_Rv3811

-0.082

-0.242

delta_Rv0954

0.141

0.213

PonA1

-0.029

-0.357

EccD1_KO

-0.428

1.036

EspI_KO

-0.034

0.034

PE35_KO

-0.604

-0.607

PPE68_KO

-0.877

-0.49

glycerol2

0.901

-1.093

lignocerate

0.793

0.6

oleate

0.906

-1.038

phosphatidylcholine

1.018

-0.101

acetate

0.318

0.464

glucAc

0.22

0.571

Rv0950ko

0.356

-0.305

Rv1096ko

0.425

1.641

Rv3684ko

-0.016

0.599

delta_otsA_trehalose

1.092

0.815