Top 10 genes with highest correlation to Rv3744/nmtR:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0393/- | (cc=0.4691) | info on Rv0393/- |
| Rv0133/- | (cc=0.4681) | info on Rv0133/- |
| Rv3470c/ilvB2 | (cc=0.4677) | info on Rv3470c/ilvB2 |
| Rv3558/PPE64 | (cc=0.4654) | info on Rv3558/PPE64 |
| Rv3142c/- | (cc=0.4531) | info on Rv3142c/- |
| Rv3517/- | (cc=0.4522) | info on Rv3517/- |
| Rv0823c/- | (cc=0.4468) | info on Rv0823c/- |
| Rv3912/- | (cc=0.4437) | info on Rv3912/- |
| Rv2797c/- | (cc=0.4368) | info on Rv2797c/- |
| Rv3904c/esxE | (cc=0.4334) | info on Rv3904c/esxE |
Correlation of Rv3744/nmtR with Rv3558/PPE64
Normalized LFCs for Rv3744/nmtR:
(description and provenance of datasets)
| Rv3744/nmtR | Rv3558/PPE64 | |
| Fe_supp_jason_reseq | -1.793 | -1.085 |
| low_pH_jason_reseq | -0.982 | -2.233 |
| NO_jason_reseq | 0.134 | -0.402 |
| B6_jason_reseq | -1.443 | -0.824 |
| MHCII_jason_reseq | -0.96 | -0.471 |
| Isoniazid02 | 0.23 | 0.426 |
| Rifampicin4 | 0.111 | 0.0 |
| Ethambutol3 | 0.745 | 1.58 |
| Meropenem3 | 0.298 | 0.017 |
| Vancomycin16 | 0.162 | 0.424 |
| Rv2680_day32 | -1.045 | 0.246 |
| H37Rv_KO_MarP | 0.138 | -0.128 |
| hypoxia_3wks | 0.949 | 0.171 |
| hypoxia_6wks | -0.831 | 0.09 |
| glycerol | -0.025 | -0.236 |
| cholesterol | 0.079 | 0.043 |
| AJ | 1.198 | 0.704 |
| Bibs02 | -0.703 | 1.201 |
| Bibs02c | -0.443 | 0.0 |
| BL6 | 0.81 | 0.555 |
| BL6a | -0.317 | -0.06 |
| BXD01 | 0.426 | 0.62 |
| BXD010 | -0.481 | 0.584 |
| BXD011 | -0.149 | -0.066 |
| BXD03 | -0.042 | 0.41 |
| BXD04 | 0.022 | -0.159 |
| BXD05 | 0.049 | -0.352 |
| BXD06 | -0.377 | 0.311 |
| BXD07 | 0.301 | 0.266 |
| BXD08 | 0.499 | 0.152 |
| BXD09 | -0.017 | 0.21 |
| CAST | 0.429 | 0.424 |
| CCcont | -0.186 | -0.174 |
| DS01 | -0.744 | 0.551 |
| DS02 | 0.118 | 0.627 |
| DS04 | 0.15 | 1.538 |
| DS0c | 0.278 | 0.658 |
| GP01 | 0.809 | 0.759 |
| GP02 | 0.245 | 0.442 |
| GP0c | -0.1 | 0.365 |
| NOD | 0.804 | 0.921 |
| NZO | 0.643 | 1.363 |
| PWK | 1.65 | 0.566 |
| H37Rv_KO_CtpC | 1.471 | 0.405 |
| H37Rv_KO_CtpD | 1.334 | 1.223 |
| H37Rv_KO_Rv1272 | -0.053 | -0.542 |
| H37Rv_KO_SugABC | 1.483 | 0.591 |
| H37Rv_KO_MbtN | -0.806 | 0.163 |
| Trans05 | 0.485 | -0.921 |
| macrophage_unactivated | -0.354 | -0.126 |
| IL1 | -1.605 | -0.326 |
| Rapamycin | -0.921 | 0.04 |
| Tcell | -0.661 | 0.127 |
| GMCSF | -0.734 | -0.686 |
| IFNab | -1.218 | -0.647 |
| IFNg | -1.013 | -0.572 |
| IFNg_GMCSF1 | -0.028 | -0.085 |
| Rv1432_day32 | -1.276 | 0.43 |
| Rv1565c_day32 | -0.174 | 0.583 |
| secA2_input | 1.747 | -0.254 |
| delta_Rv3594 | -0.424 | 0.0 |
| delta_Rv3717 | -0.245 | 0.618 |
| delta_Rv3811 | 0.77 | 0.73 |
| delta_Rv0954 | -0.074 | 0.474 |
| PonA1 | 1.046 | 1.248 |
| EccD1_KO | -0.375 | 0.48 |
| EspI_KO | -0.95 | 0.214 |
| PE35_KO | -1.342 | -0.038 |
| PPE68_KO | -2.166 | -0.253 |
| glycerol2 | -0.34 | -0.534 |
| lignocerate | -0.801 | -0.41 |
| oleate | 0.751 | 0.197 |
| phosphatidylcholine | -0.34 | -0.049 |
| acetate | -0.316 | -0.437 |
| glucAc | -0.992 | -0.701 |
| Rv0950ko | 1.182 | 0.546 |
| Rv1096ko | 0.513 | 0.32 |
| Rv3684ko | 0.069 | 0.177 |
| delta_otsA_trehalose | 1.21 | -0.715 |