Top 10 genes with highest correlation to Rv3731/ligC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3538/- | (cc=0.5859) | info on Rv3538/- |
| Rv3506/fadD17 | (cc=0.5413) | info on Rv3506/fadD17 |
| Rv0560c/- | (cc=0.536) | info on Rv0560c/- |
| Rv3903c/- | (cc=0.5198) | info on Rv3903c/- |
| Rv2826c/- | (cc=0.5121) | info on Rv2826c/- |
| Rv0089/- | (cc=0.5036) | info on Rv0089/- |
| Rv1070c/echA8 | (cc=0.4987) | info on Rv1070c/echA8 |
| Rv0758/phoR | (cc=0.4883) | info on Rv0758/phoR |
| Rv2625c/- | (cc=0.4853) | info on Rv2625c/- |
| Rv0984/moaB2 | (cc=0.4823) | info on Rv0984/moaB2 |
Correlation of Rv3731/ligC with Rv0089/-
Normalized LFCs for Rv3731/ligC:
(description and provenance of datasets)
| Rv3731/ligC | Rv0089/- | |
| Fe_supp_jason_reseq | -0.142 | -0.617 |
| low_pH_jason_reseq | 0.313 | -0.221 |
| NO_jason_reseq | -0.903 | 0.047 |
| B6_jason_reseq | -0.138 | 0.241 |
| MHCII_jason_reseq | 0.414 | 0.487 |
| Isoniazid02 | -0.073 | 0.877 |
| Rifampicin4 | -0.328 | -0.701 |
| Ethambutol3 | 1.025 | -0.483 |
| Meropenem3 | 0.27 | -0.564 |
| Vancomycin16 | 0.016 | 0.0 |
| Rv2680_day32 | 0.331 | 1.554 |
| H37Rv_KO_MarP | 0.103 | 1.943 |
| hypoxia_3wks | 0.024 | -0.59 |
| hypoxia_6wks | -0.223 | -0.699 |
| glycerol | -0.418 | -1.188 |
| cholesterol | -0.621 | -0.61 |
| AJ | -0.338 | 0.069 |
| Bibs02 | 0.019 | 0.098 |
| Bibs02c | 0.464 | 0.0 |
| BL6 | 0.034 | -1.724 |
| BL6a | 0.26 | -1.411 |
| BXD01 | -0.614 | -1.681 |
| BXD010 | -0.57 | -1.478 |
| BXD011 | 0.201 | -1.727 |
| BXD03 | 0.082 | -1.397 |
| BXD04 | 0.03 | -0.973 |
| BXD05 | -0.449 | -1.529 |
| BXD06 | -0.184 | -1.642 |
| BXD07 | -0.468 | -2.006 |
| BXD08 | -0.076 | -2.382 |
| BXD09 | -0.378 | -1.596 |
| CAST | -0.487 | 0.492 |
| CCcont | -0.463 | -0.977 |
| DS01 | 0.228 | -0.209 |
| DS02 | 0.14 | 0.153 |
| DS04 | 0.034 | 0.462 |
| DS0c | 0.438 | 0.308 |
| GP01 | 0.108 | 0.326 |
| GP02 | 0.826 | -1.336 |
| GP0c | 0.209 | -0.489 |
| NOD | -0.381 | 0.145 |
| NZO | -0.405 | -0.1 |
| PWK | -0.027 | 0.389 |
| H37Rv_KO_CtpC | 0.141 | -1.138 |
| H37Rv_KO_CtpD | -0.816 | -3.064 |
| H37Rv_KO_Rv1272 | 0.297 | -0.742 |
| H37Rv_KO_SugABC | -0.479 | -0.481 |
| H37Rv_KO_MbtN | 0.921 | -1.571 |
| Trans05 | -0.449 | 0.008 |
| macrophage_unactivated | -1.206 | -2.727 |
| IL1 | -0.427 | -1.246 |
| Rapamycin | -0.239 | -2.071 |
| Tcell | -0.89 | -1.3 |
| GMCSF | -0.053 | -1.848 |
| IFNab | -0.662 | -2.524 |
| IFNg | -0.863 | -1.871 |
| IFNg_GMCSF1 | -0.616 | -0.936 |
| Rv1432_day32 | 0.31 | 0.301 |
| Rv1565c_day32 | 0.13 | 0.594 |
| secA2_input | 0.142 | -1.028 |
| delta_Rv3594 | 0.038 | 0.0 |
| delta_Rv3717 | 0.039 | -0.216 |
| delta_Rv3811 | 0.44 | 0.755 |
| delta_Rv0954 | 0.309 | 0.442 |
| PonA1 | 0.14 | -0.308 |
| EccD1_KO | 0.033 | -0.118 |
| EspI_KO | 0.322 | 1.221 |
| PE35_KO | -0.166 | 0.204 |
| PPE68_KO | -0.41 | 1.497 |
| glycerol2 | 0.664 | 1.494 |
| lignocerate | 0.412 | 1.736 |
| oleate | 0.491 | -0.505 |
| phosphatidylcholine | 0.602 | 1.304 |
| acetate | 0.951 | 2.168 |
| glucAc | 0.247 | 1.508 |
| Rv0950ko | 0.929 | -0.169 |
| Rv1096ko | 0.663 | 0.983 |
| Rv3684ko | 0.914 | 1.019 |
| delta_otsA_trehalose | 1.783 | 1.304 |