Top 10 genes with highest correlation to Rv3731/ligC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3538/- | (cc=0.5859) | info on Rv3538/- |
| Rv3506/fadD17 | (cc=0.5413) | info on Rv3506/fadD17 |
| Rv0560c/- | (cc=0.536) | info on Rv0560c/- |
| Rv3903c/- | (cc=0.5198) | info on Rv3903c/- |
| Rv2826c/- | (cc=0.5121) | info on Rv2826c/- |
| Rv0089/- | (cc=0.5036) | info on Rv0089/- |
| Rv1070c/echA8 | (cc=0.4987) | info on Rv1070c/echA8 |
| Rv0758/phoR | (cc=0.4883) | info on Rv0758/phoR |
| Rv2625c/- | (cc=0.4853) | info on Rv2625c/- |
| Rv0984/moaB2 | (cc=0.4823) | info on Rv0984/moaB2 |
Correlation of Rv3731/ligC with Rv3538/-
Normalized LFCs for Rv3731/ligC:
(description and provenance of datasets)
| Rv3731/ligC | Rv3538/- | |
| Fe_supp_jason_reseq | -0.142 | -0.199 |
| low_pH_jason_reseq | 0.313 | 1.64 |
| NO_jason_reseq | -0.903 | -1.864 |
| B6_jason_reseq | -0.138 | 1.087 |
| MHCII_jason_reseq | 0.414 | -0.08 |
| Isoniazid02 | -0.073 | -0.371 |
| Rifampicin4 | -0.328 | -1.378 |
| Ethambutol3 | 1.025 | 3.351 |
| Meropenem3 | 0.27 | -0.305 |
| Vancomycin16 | 0.016 | -0.931 |
| Rv2680_day32 | 0.331 | -0.376 |
| H37Rv_KO_MarP | 0.103 | 0.062 |
| hypoxia_3wks | 0.024 | -1.208 |
| hypoxia_6wks | -0.223 | -0.255 |
| glycerol | -0.418 | 0.592 |
| cholesterol | -0.621 | -2.077 |
| AJ | -0.338 | -0.533 |
| Bibs02 | 0.019 | -0.67 |
| Bibs02c | 0.464 | -0.518 |
| BL6 | 0.034 | -0.686 |
| BL6a | 0.26 | -0.768 |
| BXD01 | -0.614 | -1.266 |
| BXD010 | -0.57 | -1.397 |
| BXD011 | 0.201 | -1.444 |
| BXD03 | 0.082 | -2.02 |
| BXD04 | 0.03 | -1.402 |
| BXD05 | -0.449 | -2.501 |
| BXD06 | -0.184 | -2.601 |
| BXD07 | -0.468 | -1.834 |
| BXD08 | -0.076 | -1.761 |
| BXD09 | -0.378 | -2.099 |
| CAST | -0.487 | -1.919 |
| CCcont | -0.463 | 1.178 |
| DS01 | 0.228 | -1.071 |
| DS02 | 0.14 | -0.345 |
| DS04 | 0.034 | -1.493 |
| DS0c | 0.438 | -1.54 |
| GP01 | 0.108 | -1.416 |
| GP02 | 0.826 | -1.705 |
| GP0c | 0.209 | -1.314 |
| NOD | -0.381 | 2.21 |
| NZO | -0.405 | 0.223 |
| PWK | -0.027 | -1.228 |
| H37Rv_KO_CtpC | 0.141 | -1.705 |
| H37Rv_KO_CtpD | -0.816 | -1.551 |
| H37Rv_KO_Rv1272 | 0.297 | -0.487 |
| H37Rv_KO_SugABC | -0.479 | -1.93 |
| H37Rv_KO_MbtN | 0.921 | -0.515 |
| Trans05 | -0.449 | -0.818 |
| macrophage_unactivated | -1.206 | -2.607 |
| IL1 | -0.427 | -3.307 |
| Rapamycin | -0.239 | -2.338 |
| Tcell | -0.89 | -3.904 |
| GMCSF | -0.053 | -0.098 |
| IFNab | -0.662 | -1.445 |
| IFNg | -0.863 | -1.871 |
| IFNg_GMCSF1 | -0.616 | -3.764 |
| Rv1432_day32 | 0.31 | -2.48 |
| Rv1565c_day32 | 0.13 | -0.982 |
| secA2_input | 0.142 | 1.199 |
| delta_Rv3594 | 0.038 | 0.788 |
| delta_Rv3717 | 0.039 | 0.875 |
| delta_Rv3811 | 0.44 | 0.617 |
| delta_Rv0954 | 0.309 | 0.398 |
| PonA1 | 0.14 | 0.355 |
| EccD1_KO | 0.033 | 0.635 |
| EspI_KO | 0.322 | 0.445 |
| PE35_KO | -0.166 | -1.091 |
| PPE68_KO | -0.41 | -0.71 |
| glycerol2 | 0.664 | 1.822 |
| lignocerate | 0.412 | 2.468 |
| oleate | 0.491 | -0.537 |
| phosphatidylcholine | 0.602 | 1.882 |
| acetate | 0.951 | 2.509 |
| glucAc | 0.247 | 1.713 |
| Rv0950ko | 0.929 | 1.384 |
| Rv1096ko | 0.663 | 1.882 |
| Rv3684ko | 0.914 | 1.916 |
| delta_otsA_trehalose | 1.783 | 1.01 |