Top 10 genes with highest correlation to Rv3715c/recR:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1908c/katG | (cc=0.6779) | info on Rv1908c/katG |
| Rv1633/uvrB | (cc=0.6607) | info on Rv1633/uvrB |
| Rv1420/uvrC | (cc=0.6191) | info on Rv1420/uvrC |
| Rv1701/- | (cc=0.6058) | info on Rv1701/- |
| Rv1401/- | (cc=0.6015) | info on Rv1401/- |
| Rv1638/uvrA | (cc=0.6001) | info on Rv1638/uvrA |
| Rv0949/uvrD1 | (cc=0.5844) | info on Rv0949/uvrD1 |
| Rv3261/fbiA | (cc=0.579) | info on Rv3261/fbiA |
| Rv3269/- | (cc=0.5771) | info on Rv3269/- |
| Rv3624c/hpt | (cc=0.5628) | info on Rv3624c/hpt |
Correlation of Rv3715c/recR with Rv3269/-
Normalized LFCs for Rv3715c/recR:
(description and provenance of datasets)
| Rv3715c/recR | Rv3269/- | |
| Fe_supp_jason_reseq | 2.883 | 2.502 |
| low_pH_jason_reseq | 0.0 | -0.811 |
| NO_jason_reseq | -1.993 | -1.273 |
| B6_jason_reseq | -0.413 | -0.119 |
| MHCII_jason_reseq | -0.283 | 0.189 |
| Isoniazid02 | 0.987 | 1.759 |
| Rifampicin4 | -0.357 | -0.523 |
| Ethambutol3 | 0.574 | -0.399 |
| Meropenem3 | 0.223 | -0.648 |
| Vancomycin16 | -0.976 | -1.995 |
| Rv2680_day32 | -0.642 | 0.0 |
| H37Rv_KO_MarP | -1.411 | -1.411 |
| hypoxia_3wks | -0.522 | -3.218 |
| hypoxia_6wks | -0.576 | -1.815 |
| glycerol | 1.537 | 0.0 |
| cholesterol | 0.463 | 2.81 |
| AJ | 0.324 | 1.425 |
| Bibs02 | 0.371 | 0.183 |
| Bibs02c | -0.527 | 0.0 |
| BL6 | 0.649 | 0.125 |
| BL6a | 0.0 | 1.897 |
| BXD01 | 0.79 | 1.247 |
| BXD010 | 0.722 | 0.128 |
| BXD011 | 0.0 | 0.987 |
| BXD03 | 1.448 | 0.475 |
| BXD04 | 0.395 | 0.0 |
| BXD05 | 0.502 | 0.135 |
| BXD06 | 0.566 | 0.366 |
| BXD07 | 1.445 | 0.851 |
| BXD08 | 1.351 | 0.133 |
| BXD09 | 0.285 | 0.943 |
| CAST | -0.809 | 0.439 |
| CCcont | 2.556 | 3.546 |
| DS01 | 0.171 | 1.451 |
| DS02 | -0.764 | 0.0 |
| DS04 | 0.394 | 0.822 |
| DS0c | 0.157 | 0.0 |
| GP01 | 1.484 | 0.0 |
| GP02 | 0.06 | 0.0 |
| GP0c | 0.893 | 0.0 |
| NOD | -0.566 | 0.0 |
| NZO | 1.124 | 0.701 |
| PWK | -0.494 | 0.374 |
| H37Rv_KO_CtpC | 2.019 | 2.984 |
| H37Rv_KO_CtpD | 0.537 | 0.537 |
| H37Rv_KO_Rv1272 | -0.495 | 0.141 |
| H37Rv_KO_SugABC | 1.605 | 1.066 |
| H37Rv_KO_MbtN | 0.487 | 1.109 |
| Trans05 | 0.344 | 0.249 |
| macrophage_unactivated | 0.669 | -0.275 |
| IL1 | -1.011 | -1.863 |
| Rapamycin | -0.491 | -1.188 |
| Tcell | 1.098 | -1.639 |
| GMCSF | -1.444 | -1.328 |
| IFNab | -0.236 | -0.547 |
| IFNg | -0.911 | -1.034 |
| IFNg_GMCSF1 | -0.779 | -2.407 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.766 | 1.895 |
| secA2_input | 0.994 | -1.691 |
| delta_Rv3594 | 0.961 | 2.951 |
| delta_Rv3717 | 0.257 | 2.246 |
| delta_Rv3811 | 0.934 | 2.342 |
| delta_Rv0954 | 1.145 | 0.391 |
| PonA1 | 0.145 | 1.1 |
| EccD1_KO | -1.786 | -1.825 |
| EspI_KO | -2.772 | -0.75 |
| PE35_KO | -0.817 | 0.548 |
| PPE68_KO | -1.805 | -0.618 |
| glycerol2 | -2.434 | -1.6 |
| lignocerate | -2.02 | -1.529 |
| oleate | -1.961 | -1.187 |
| phosphatidylcholine | -2.027 | -2.094 |
| acetate | -0.166 | -1.034 |
| glucAc | 0.605 | -0.899 |
| Rv0950ko | -0.926 | 0.862 |
| Rv1096ko | 0.507 | -1.559 |
| Rv3684ko | 1.094 | 0.0 |
| delta_otsA_trehalose | 0.83 | -0.204 |