Top 10 genes with highest correlation to Rv3705A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1378c/- | (cc=0.6749) | info on Rv1378c/- |
| Rv3353c/- | (cc=0.6744) | info on Rv3353c/- |
| Rv0278c/PE_PGRS3 | (cc=0.6353) | info on Rv0278c/PE_PGRS3 |
| Rv2657c/- | (cc=0.6258) | info on Rv2657c/- |
| Rv3354/- | (cc=0.6072) | info on Rv3354/- |
| Rv0316/- | (cc=0.5976) | info on Rv0316/- |
| Rv3056/dinP | (cc=0.5826) | info on Rv3056/dinP |
| Rv3395c/- | (cc=0.5694) | info on Rv3395c/- |
| Rv2638/- | (cc=0.5676) | info on Rv2638/- |
| Rv1834/lipZ | (cc=0.5635) | info on Rv1834/lipZ |
Correlation of Rv3705A/- with Rv3395c/-
Normalized LFCs for Rv3705A/-:
(description and provenance of datasets)
| Rv3705A/- | Rv3395c/- | |
| Fe_supp_jason_reseq | -0.338 | 0.38 |
| low_pH_jason_reseq | -1.456 | 0.142 |
| NO_jason_reseq | -0.247 | 1.496 |
| B6_jason_reseq | -0.398 | 2.279 |
| MHCII_jason_reseq | 0.675 | 2.468 |
| Isoniazid02 | 0.837 | 2.949 |
| Rifampicin4 | 0.528 | 1.776 |
| Ethambutol3 | 0.197 | 2.824 |
| Meropenem3 | 0.639 | 0.666 |
| Vancomycin16 | 0.281 | 0.83 |
| Rv2680_day32 | -0.912 | -0.131 |
| H37Rv_KO_MarP | 0.152 | 0.207 |
| hypoxia_3wks | -0.734 | -1.463 |
| hypoxia_6wks | -0.367 | -1.685 |
| glycerol | 0.847 | 1.328 |
| cholesterol | 0.736 | -0.104 |
| AJ | -0.015 | 0.723 |
| Bibs02 | 0.799 | -1.807 |
| Bibs02c | -0.708 | -0.13 |
| BL6 | 0.028 | -1.264 |
| BL6a | -1.597 | -0.217 |
| BXD01 | -0.269 | -1.377 |
| BXD010 | -1.023 | -1.699 |
| BXD011 | -1.804 | -1.44 |
| BXD03 | -1.621 | -2.616 |
| BXD04 | -1.751 | -1.368 |
| BXD05 | -0.512 | -1.745 |
| BXD06 | -1.28 | -2.2 |
| BXD07 | -1.645 | -3.021 |
| BXD08 | -0.368 | 1.085 |
| BXD09 | -1.074 | -2.15 |
| CAST | -0.068 | 0.02 |
| CCcont | -0.267 | -0.876 |
| DS01 | 0.548 | -0.303 |
| DS02 | 0.833 | 0.214 |
| DS04 | 0.989 | 0.0 |
| DS0c | 1.413 | 0.231 |
| GP01 | -0.06 | -1.669 |
| GP02 | 1.146 | -1.61 |
| GP0c | -0.36 | -0.931 |
| NOD | 0.491 | -0.971 |
| NZO | 0.701 | -0.218 |
| PWK | -0.007 | 0.871 |
| H37Rv_KO_CtpC | 0.206 | -3.435 |
| H37Rv_KO_CtpD | -1.572 | -2.598 |
| H37Rv_KO_Rv1272 | -0.477 | 1.022 |
| H37Rv_KO_SugABC | -2.096 | -1.973 |
| H37Rv_KO_MbtN | 1.266 | -1.836 |
| Trans05 | 0.557 | -0.045 |
| macrophage_unactivated | -0.451 | -3.857 |
| IL1 | -2.331 | -4.405 |
| Rapamycin | -0.77 | -3.069 |
| Tcell | -0.818 | -2.255 |
| GMCSF | -0.557 | -2.64 |
| IFNab | -1.566 | -0.553 |
| IFNg | -1.799 | -1.849 |
| IFNg_GMCSF1 | -1.948 | -1.524 |
| Rv1432_day32 | 0.391 | -0.142 |
| Rv1565c_day32 | 1.145 | -2.088 |
| secA2_input | 0.62 | 1.108 |
| delta_Rv3594 | -0.656 | 2.877 |
| delta_Rv3717 | 0.0 | 3.361 |
| delta_Rv3811 | 0.897 | 1.988 |
| delta_Rv0954 | 1.021 | 2.113 |
| PonA1 | 0.285 | 2.765 |
| EccD1_KO | -0.687 | -0.296 |
| EspI_KO | -0.18 | -1.335 |
| PE35_KO | -0.405 | -1.508 |
| PPE68_KO | -0.122 | -1.129 |
| glycerol2 | 1.529 | 3.254 |
| lignocerate | 2.029 | 3.841 |
| oleate | -0.225 | 0.0 |
| phosphatidylcholine | 1.717 | 3.408 |
| acetate | 1.165 | 5.243 |
| glucAc | 1.222 | 3.947 |
| Rv0950ko | -0.332 | -0.344 |
| Rv1096ko | -0.594 | 0.268 |
| Rv3684ko | 0.016 | 0.4 |
| delta_otsA_trehalose | -0.801 | -0.408 |