Top 10 genes with highest correlation to Rv3705A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1378c/- | (cc=0.6749) | info on Rv1378c/- |
| Rv3353c/- | (cc=0.6744) | info on Rv3353c/- |
| Rv0278c/PE_PGRS3 | (cc=0.6353) | info on Rv0278c/PE_PGRS3 |
| Rv2657c/- | (cc=0.6258) | info on Rv2657c/- |
| Rv3354/- | (cc=0.6072) | info on Rv3354/- |
| Rv0316/- | (cc=0.5976) | info on Rv0316/- |
| Rv3056/dinP | (cc=0.5826) | info on Rv3056/dinP |
| Rv3395c/- | (cc=0.5694) | info on Rv3395c/- |
| Rv2638/- | (cc=0.5676) | info on Rv2638/- |
| Rv1834/lipZ | (cc=0.5635) | info on Rv1834/lipZ |
Correlation of Rv3705A/- with Rv3353c/-
Normalized LFCs for Rv3705A/-:
(description and provenance of datasets)
| Rv3705A/- | Rv3353c/- | |
| Fe_supp_jason_reseq | -0.338 | -0.717 |
| low_pH_jason_reseq | -1.456 | -0.11 |
| NO_jason_reseq | -0.247 | -0.278 |
| B6_jason_reseq | -0.398 | 0.221 |
| MHCII_jason_reseq | 0.675 | 1.201 |
| Isoniazid02 | 0.837 | -0.202 |
| Rifampicin4 | 0.528 | -0.376 |
| Ethambutol3 | 0.197 | -0.405 |
| Meropenem3 | 0.639 | -0.026 |
| Vancomycin16 | 0.281 | 0.172 |
| Rv2680_day32 | -0.912 | -1.07 |
| H37Rv_KO_MarP | 0.152 | 0.638 |
| hypoxia_3wks | -0.734 | -0.478 |
| hypoxia_6wks | -0.367 | -1.063 |
| glycerol | 0.847 | 0.846 |
| cholesterol | 0.736 | 0.675 |
| AJ | -0.015 | 0.62 |
| Bibs02 | 0.799 | 0.603 |
| Bibs02c | -0.708 | -0.582 |
| BL6 | 0.028 | -0.568 |
| BL6a | -1.597 | -0.494 |
| BXD01 | -0.269 | -1.238 |
| BXD010 | -1.023 | -2.853 |
| BXD011 | -1.804 | -0.857 |
| BXD03 | -1.621 | -0.144 |
| BXD04 | -1.751 | -1.562 |
| BXD05 | -0.512 | -1.466 |
| BXD06 | -1.28 | -1.137 |
| BXD07 | -1.645 | -1.715 |
| BXD08 | -0.368 | -1.122 |
| BXD09 | -1.074 | -1.577 |
| CAST | -0.068 | 0.127 |
| CCcont | -0.267 | -0.098 |
| DS01 | 0.548 | -0.137 |
| DS02 | 0.833 | -0.471 |
| DS04 | 0.989 | 0.793 |
| DS0c | 1.413 | -0.572 |
| GP01 | -0.06 | -0.708 |
| GP02 | 1.146 | 0.932 |
| GP0c | -0.36 | -2.083 |
| NOD | 0.491 | 0.848 |
| NZO | 0.701 | 0.533 |
| PWK | -0.007 | 0.443 |
| H37Rv_KO_CtpC | 0.206 | 0.684 |
| H37Rv_KO_CtpD | -1.572 | 0.211 |
| H37Rv_KO_Rv1272 | -0.477 | -0.093 |
| H37Rv_KO_SugABC | -2.096 | -2.271 |
| H37Rv_KO_MbtN | 1.266 | -1.938 |
| Trans05 | 0.557 | -0.616 |
| macrophage_unactivated | -0.451 | -1.218 |
| IL1 | -2.331 | -3.1 |
| Rapamycin | -0.77 | -1.553 |
| Tcell | -0.818 | -1.548 |
| GMCSF | -0.557 | -1.45 |
| IFNab | -1.566 | -3.205 |
| IFNg | -1.799 | -4.196 |
| IFNg_GMCSF1 | -1.948 | -0.591 |
| Rv1432_day32 | 0.391 | 0.0 |
| Rv1565c_day32 | 1.145 | -0.504 |
| secA2_input | 0.62 | -0.712 |
| delta_Rv3594 | -0.656 | -0.595 |
| delta_Rv3717 | 0.0 | 0.132 |
| delta_Rv3811 | 0.897 | 0.8 |
| delta_Rv0954 | 1.021 | 1.271 |
| PonA1 | 0.285 | 1.024 |
| EccD1_KO | -0.687 | 0.358 |
| EspI_KO | -0.18 | -0.471 |
| PE35_KO | -0.405 | -0.866 |
| PPE68_KO | -0.122 | -0.682 |
| glycerol2 | 1.529 | 2.969 |
| lignocerate | 2.029 | 3.989 |
| oleate | -0.225 | -1.691 |
| phosphatidylcholine | 1.717 | 2.968 |
| acetate | 1.165 | 3.361 |
| glucAc | 1.222 | 2.601 |
| Rv0950ko | -0.332 | -0.826 |
| Rv1096ko | -0.594 | 0.905 |
| Rv3684ko | 0.016 | 2.112 |
| delta_otsA_trehalose | -0.801 | -0.27 |