Top 10 genes with highest correlation to Rv3705A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1378c/- | (cc=0.6749) | info on Rv1378c/- |
| Rv3353c/- | (cc=0.6744) | info on Rv3353c/- |
| Rv0278c/PE_PGRS3 | (cc=0.6353) | info on Rv0278c/PE_PGRS3 |
| Rv2657c/- | (cc=0.6258) | info on Rv2657c/- |
| Rv3354/- | (cc=0.6072) | info on Rv3354/- |
| Rv0316/- | (cc=0.5976) | info on Rv0316/- |
| Rv3056/dinP | (cc=0.5826) | info on Rv3056/dinP |
| Rv3395c/- | (cc=0.5694) | info on Rv3395c/- |
| Rv2638/- | (cc=0.5676) | info on Rv2638/- |
| Rv1834/lipZ | (cc=0.5635) | info on Rv1834/lipZ |
Correlation of Rv3705A/- with Rv2638/-
Normalized LFCs for Rv3705A/-:
(description and provenance of datasets)
| Rv3705A/- | Rv2638/- | |
| Fe_supp_jason_reseq | -0.338 | -0.785 |
| low_pH_jason_reseq | -1.456 | 0.512 |
| NO_jason_reseq | -0.247 | 0.719 |
| B6_jason_reseq | -0.398 | 0.607 |
| MHCII_jason_reseq | 0.675 | 1.199 |
| Isoniazid02 | 0.837 | -0.137 |
| Rifampicin4 | 0.528 | 0.279 |
| Ethambutol3 | 0.197 | -0.146 |
| Meropenem3 | 0.639 | -0.06 |
| Vancomycin16 | 0.281 | 0.042 |
| Rv2680_day32 | -0.912 | 0.944 |
| H37Rv_KO_MarP | 0.152 | -0.045 |
| hypoxia_3wks | -0.734 | -0.55 |
| hypoxia_6wks | -0.367 | 1.28 |
| glycerol | 0.847 | -0.102 |
| cholesterol | 0.736 | 0.163 |
| AJ | -0.015 | 0.091 |
| Bibs02 | 0.799 | -0.056 |
| Bibs02c | -0.708 | 0.061 |
| BL6 | 0.028 | 0.021 |
| BL6a | -1.597 | -0.913 |
| BXD01 | -0.269 | -1.3 |
| BXD010 | -1.023 | -0.34 |
| BXD011 | -1.804 | -2.215 |
| BXD03 | -1.621 | -1.293 |
| BXD04 | -1.751 | 0.099 |
| BXD05 | -0.512 | -0.989 |
| BXD06 | -1.28 | -1.212 |
| BXD07 | -1.645 | -1.905 |
| BXD08 | -0.368 | -1.813 |
| BXD09 | -1.074 | -0.932 |
| CAST | -0.068 | -0.701 |
| CCcont | -0.267 | -0.883 |
| DS01 | 0.548 | 0.272 |
| DS02 | 0.833 | -0.925 |
| DS04 | 0.989 | 0.824 |
| DS0c | 1.413 | 0.118 |
| GP01 | -0.06 | -0.313 |
| GP02 | 1.146 | 0.429 |
| GP0c | -0.36 | 1.536 |
| NOD | 0.491 | -0.122 |
| NZO | 0.701 | 0.842 |
| PWK | -0.007 | -0.597 |
| H37Rv_KO_CtpC | 0.206 | -0.357 |
| H37Rv_KO_CtpD | -1.572 | -0.33 |
| H37Rv_KO_Rv1272 | -0.477 | -1.469 |
| H37Rv_KO_SugABC | -2.096 | -1.338 |
| H37Rv_KO_MbtN | 1.266 | -0.865 |
| Trans05 | 0.557 | -1.674 |
| macrophage_unactivated | -0.451 | -0.568 |
| IL1 | -2.331 | -1.201 |
| Rapamycin | -0.77 | -1.182 |
| Tcell | -0.818 | -0.968 |
| GMCSF | -0.557 | -1.096 |
| IFNab | -1.566 | -0.928 |
| IFNg | -1.799 | -0.871 |
| IFNg_GMCSF1 | -1.948 | -1.436 |
| Rv1432_day32 | 0.391 | 0.495 |
| Rv1565c_day32 | 1.145 | -0.648 |
| secA2_input | 0.62 | -0.291 |
| delta_Rv3594 | -0.656 | -1.309 |
| delta_Rv3717 | 0.0 | 0.204 |
| delta_Rv3811 | 0.897 | -0.373 |
| delta_Rv0954 | 1.021 | 0.349 |
| PonA1 | 0.285 | -0.193 |
| EccD1_KO | -0.687 | 0.181 |
| EspI_KO | -0.18 | -0.853 |
| PE35_KO | -0.405 | -0.49 |
| PPE68_KO | -0.122 | -0.403 |
| glycerol2 | 1.529 | 2.169 |
| lignocerate | 2.029 | 2.979 |
| oleate | -0.225 | -0.658 |
| phosphatidylcholine | 1.717 | 2.657 |
| acetate | 1.165 | 2.675 |
| glucAc | 1.222 | 2.4 |
| Rv0950ko | -0.332 | 1.396 |
| Rv1096ko | -0.594 | 0.67 |
| Rv3684ko | 0.016 | 0.508 |
| delta_otsA_trehalose | -0.801 | -0.228 |