Top 10 genes with highest correlation to Rv3701c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0348/- | (cc=0.5023) | info on Rv0348/- |
| Rv2529/- | (cc=0.445) | info on Rv2529/- |
| Rv1540/- | (cc=0.4204) | info on Rv1540/- |
| Rv3223c/sigH | (cc=0.4133) | info on Rv3223c/sigH |
| Rv2239c/- | (cc=0.4052) | info on Rv2239c/- |
| Rv3208A/TB9.4 | (cc=0.4027) | info on Rv3208A/TB9.4 |
| Rv0686/- | (cc=0.4003) | info on Rv0686/- |
| Rv3407/vapB47 | (cc=0.4002) | info on Rv3407/vapB47 |
| Rv2119/- | (cc=0.3984) | info on Rv2119/- |
| Rv1441c/PE_PGRS26 | (cc=0.3977) | info on Rv1441c/PE_PGRS26 |
Correlation of Rv3701c/- with Rv3208A/TB9.4
Normalized LFCs for Rv3701c/-:
(description and provenance of datasets)
| Rv3701c/- | Rv3208A/TB9.4 | |
| Fe_supp_jason_reseq | 0.391 | 2.398 |
| low_pH_jason_reseq | 0.0 | 0.694 |
| NO_jason_reseq | -0.244 | -0.263 |
| B6_jason_reseq | 0.0 | 1.57 |
| MHCII_jason_reseq | -0.293 | 0.929 |
| Isoniazid02 | 0.156 | -0.518 |
| Rifampicin4 | 1.048 | 0.826 |
| Ethambutol3 | 2.178 | 2.476 |
| Meropenem3 | 0.829 | 0.126 |
| Vancomycin16 | 0.419 | 0.783 |
| Rv2680_day32 | -0.359 | 0.442 |
| H37Rv_KO_MarP | 0.401 | 1.016 |
| hypoxia_3wks | 0.0 | -1.882 |
| hypoxia_6wks | -1.222 | -1.633 |
| glycerol | 1.537 | 0.549 |
| cholesterol | 0.203 | 0.952 |
| AJ | -0.373 | -1.264 |
| Bibs02 | -0.294 | -0.898 |
| Bibs02c | -0.735 | 0.887 |
| BL6 | -0.439 | -0.948 |
| BL6a | 0.277 | 1.267 |
| BXD01 | 0.0 | -0.479 |
| BXD010 | -0.45 | -1.775 |
| BXD011 | 0.475 | -0.226 |
| BXD03 | 0.701 | -1.273 |
| BXD04 | 0.325 | -1.268 |
| BXD05 | 0.924 | -1.38 |
| BXD06 | 0.498 | -0.967 |
| BXD07 | -0.107 | -1.096 |
| BXD08 | 0.913 | -1.688 |
| BXD09 | 0.37 | -1.267 |
| CAST | -0.809 | -1.255 |
| CCcont | 0.477 | 1.69 |
| DS01 | 0.479 | -0.71 |
| DS02 | -0.35 | -0.607 |
| DS04 | -0.489 | -0.76 |
| DS0c | 0.809 | 0.267 |
| GP01 | -0.347 | 0.559 |
| GP02 | -0.21 | -0.603 |
| GP0c | 0.182 | 0.796 |
| NOD | 0.314 | 0.877 |
| NZO | -0.503 | 0.217 |
| PWK | -0.152 | -0.816 |
| H37Rv_KO_CtpC | -0.126 | 0.421 |
| H37Rv_KO_CtpD | 0.333 | 0.509 |
| H37Rv_KO_Rv1272 | 1.264 | 1.508 |
| H37Rv_KO_SugABC | -0.348 | 1.283 |
| H37Rv_KO_MbtN | 1.209 | -1.428 |
| Trans05 | 0.554 | 1.464 |
| macrophage_unactivated | 0.0 | -0.316 |
| IL1 | 0.0 | -2.029 |
| Rapamycin | -1.488 | -0.988 |
| Tcell | -0.228 | -0.215 |
| GMCSF | -0.38 | -0.544 |
| IFNab | 0.762 | -0.2 |
| IFNg | -0.385 | -1.438 |
| IFNg_GMCSF1 | -0.698 | -2.85 |
| Rv1432_day32 | 0.0 | -0.314 |
| Rv1565c_day32 | 0.0 | 2.132 |
| secA2_input | -1.299 | -2.134 |
| delta_Rv3594 | 0.61 | 3.706 |
| delta_Rv3717 | 0.944 | 2.44 |
| delta_Rv3811 | -0.1 | 2.235 |
| delta_Rv0954 | -0.715 | 2.571 |
| PonA1 | -0.753 | 0.794 |
| EccD1_KO | 1.273 | 0.52 |
| EspI_KO | -0.163 | 0.821 |
| PE35_KO | 2.018 | 1.12 |
| PPE68_KO | 1.501 | 2.259 |
| glycerol2 | 0.161 | 3.174 |
| lignocerate | 0.27 | 2.649 |
| oleate | -0.179 | -2.12 |
| phosphatidylcholine | -0.176 | 2.465 |
| acetate | 1.561 | 4.178 |
| glucAc | 1.415 | 3.653 |
| Rv0950ko | -0.817 | -1.167 |
| Rv1096ko | 0.688 | -0.585 |
| Rv3684ko | -0.573 | 0.802 |
| delta_otsA_trehalose | 0.133 | 0.955 |