Top 10 genes with highest correlation to Rv3701c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0348/- | (cc=0.5023) | info on Rv0348/- |
| Rv2529/- | (cc=0.445) | info on Rv2529/- |
| Rv1540/- | (cc=0.4204) | info on Rv1540/- |
| Rv3223c/sigH | (cc=0.4133) | info on Rv3223c/sigH |
| Rv2239c/- | (cc=0.4052) | info on Rv2239c/- |
| Rv3208A/TB9.4 | (cc=0.4027) | info on Rv3208A/TB9.4 |
| Rv0686/- | (cc=0.4003) | info on Rv0686/- |
| Rv3407/vapB47 | (cc=0.4002) | info on Rv3407/vapB47 |
| Rv2119/- | (cc=0.3984) | info on Rv2119/- |
| Rv1441c/PE_PGRS26 | (cc=0.3977) | info on Rv1441c/PE_PGRS26 |
Correlation of Rv3701c/- with Rv2239c/-
Normalized LFCs for Rv3701c/-:
(description and provenance of datasets)
| Rv3701c/- | Rv2239c/- | |
| Fe_supp_jason_reseq | 0.391 | 2.262 |
| low_pH_jason_reseq | 0.0 | 0.0 |
| NO_jason_reseq | -0.244 | 0.0 |
| B6_jason_reseq | 0.0 | 0.0 |
| MHCII_jason_reseq | -0.293 | 0.135 |
| Isoniazid02 | 0.156 | -0.851 |
| Rifampicin4 | 1.048 | 1.836 |
| Ethambutol3 | 2.178 | 3.191 |
| Meropenem3 | 0.829 | 2.116 |
| Vancomycin16 | 0.419 | 1.955 |
| Rv2680_day32 | -0.359 | -0.877 |
| H37Rv_KO_MarP | 0.401 | 1.374 |
| hypoxia_3wks | 0.0 | -1.388 |
| hypoxia_6wks | -1.222 | -1.013 |
| glycerol | 1.537 | 2.567 |
| cholesterol | 0.203 | -1.617 |
| AJ | -0.373 | -1.395 |
| Bibs02 | -0.294 | -1.209 |
| Bibs02c | -0.735 | 0.376 |
| BL6 | -0.439 | -1.52 |
| BL6a | 0.277 | -1.31 |
| BXD01 | 0.0 | -1.583 |
| BXD010 | -0.45 | -1.557 |
| BXD011 | 0.475 | -0.694 |
| BXD03 | 0.701 | -1.644 |
| BXD04 | 0.325 | -1.503 |
| BXD05 | 0.924 | -1.636 |
| BXD06 | 0.498 | -1.623 |
| BXD07 | -0.107 | -1.683 |
| BXD08 | 0.913 | -1.617 |
| BXD09 | 0.37 | -1.708 |
| CAST | -0.809 | -1.523 |
| CCcont | 0.477 | 1.614 |
| DS01 | 0.479 | 1.593 |
| DS02 | -0.35 | 0.671 |
| DS04 | -0.489 | 0.944 |
| DS0c | 0.809 | 0.966 |
| GP01 | -0.347 | -1.2 |
| GP02 | -0.21 | -1.011 |
| GP0c | 0.182 | -1.58 |
| NOD | 0.314 | 1.185 |
| NZO | -0.503 | -2.045 |
| PWK | -0.152 | -2.011 |
| H37Rv_KO_CtpC | -0.126 | -1.813 |
| H37Rv_KO_CtpD | 0.333 | 0.228 |
| H37Rv_KO_Rv1272 | 1.264 | -1.574 |
| H37Rv_KO_SugABC | -0.348 | -0.487 |
| H37Rv_KO_MbtN | 1.209 | -1.253 |
| Trans05 | 0.554 | -1.459 |
| macrophage_unactivated | 0.0 | -0.83 |
| IL1 | 0.0 | -0.78 |
| Rapamycin | -1.488 | -0.807 |
| Tcell | -0.228 | -0.411 |
| GMCSF | -0.38 | -0.694 |
| IFNab | 0.762 | -0.795 |
| IFNg | -0.385 | -0.703 |
| IFNg_GMCSF1 | -0.698 | -0.826 |
| Rv1432_day32 | 0.0 | -0.494 |
| Rv1565c_day32 | 0.0 | -0.199 |
| secA2_input | -1.299 | -1.811 |
| delta_Rv3594 | 0.61 | -0.757 |
| delta_Rv3717 | 0.944 | -2.054 |
| delta_Rv3811 | -0.1 | -1.166 |
| delta_Rv0954 | -0.715 | 1.136 |
| PonA1 | -0.753 | 2.873 |
| EccD1_KO | 1.273 | -0.901 |
| EspI_KO | -0.163 | -2.547 |
| PE35_KO | 2.018 | 3.34 |
| PPE68_KO | 1.501 | 4.012 |
| glycerol2 | 0.161 | 0.241 |
| lignocerate | 0.27 | -1.695 |
| oleate | -0.179 | -3.57 |
| phosphatidylcholine | -0.176 | -1.788 |
| acetate | 1.561 | 1.179 |
| glucAc | 1.415 | 1.925 |
| Rv0950ko | -0.817 | -2.081 |
| Rv1096ko | 0.688 | -1.984 |
| Rv3684ko | -0.573 | -0.642 |
| delta_otsA_trehalose | 0.133 | 2.308 |