Top 10 genes with highest correlation to Rv3661/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0998/- | (cc=0.5508) | info on Rv0998/- |
| Rv1421/- | (cc=0.507) | info on Rv1421/- |
| Rv0392c/ndhA | (cc=0.4982) | info on Rv0392c/ndhA |
| Rv3707c/- | (cc=0.4874) | info on Rv3707c/- |
| Rv2691/ceoB | (cc=0.486) | info on Rv2691/ceoB |
| Rv2694c/- | (cc=0.4787) | info on Rv2694c/- |
| Rv3413c/- | (cc=0.4772) | info on Rv3413c/- |
| Rv3005c/- | (cc=0.4726) | info on Rv3005c/- |
| Rv2831/echA16 | (cc=0.4703) | info on Rv2831/echA16 |
| Rv3807c/- | (cc=0.4692) | info on Rv3807c/- |
Correlation of Rv3661/- with Rv2831/echA16
Normalized LFCs for Rv3661/-:
(description and provenance of datasets)
| Rv3661/- | Rv2831/echA16 | |
| Fe_supp_jason_reseq | 1.727 | -0.256 |
| low_pH_jason_reseq | 0.612 | 0.639 |
| NO_jason_reseq | -0.995 | -0.116 |
| B6_jason_reseq | -0.881 | 1.588 |
| MHCII_jason_reseq | 1.179 | 1.883 |
| Isoniazid02 | 0.231 | 2.51 |
| Rifampicin4 | 0.609 | 0.601 |
| Ethambutol3 | 0.946 | 2.881 |
| Meropenem3 | 0.161 | 0.048 |
| Vancomycin16 | 0.804 | 0.499 |
| Rv2680_day32 | -1.908 | -3.534 |
| H37Rv_KO_MarP | -1.872 | -0.086 |
| hypoxia_3wks | 0.809 | 0.861 |
| hypoxia_6wks | 0.885 | 0.489 |
| glycerol | 0.815 | 0.205 |
| cholesterol | 0.931 | 1.595 |
| AJ | -0.938 | 0.145 |
| Bibs02 | 1.456 | 0.54 |
| Bibs02c | 1.475 | -0.527 |
| BL6 | 0.205 | -1.548 |
| BL6a | 0.865 | -0.756 |
| BXD01 | -0.383 | -1.326 |
| BXD010 | -0.556 | -1.676 |
| BXD011 | -1.201 | 0.027 |
| BXD03 | -1.413 | -1.77 |
| BXD04 | -0.735 | -1.259 |
| BXD05 | -1.001 | -0.812 |
| BXD06 | -0.52 | -1.436 |
| BXD07 | -0.014 | -0.809 |
| BXD08 | -0.746 | -0.549 |
| BXD09 | -0.568 | -1.143 |
| CAST | -1.76 | -1.39 |
| CCcont | 0.826 | -1.479 |
| DS01 | 1.53 | 0.541 |
| DS02 | 1.454 | 0.859 |
| DS04 | 0.994 | 1.427 |
| DS0c | 1.766 | 0.046 |
| GP01 | 0.877 | 0.531 |
| GP02 | 0.204 | -1.576 |
| GP0c | 0.359 | -0.381 |
| NOD | -1.113 | -0.724 |
| NZO | -1.221 | -1.623 |
| PWK | -1.309 | 0.432 |
| H37Rv_KO_CtpC | -0.657 | -1.522 |
| H37Rv_KO_CtpD | -0.091 | 0.573 |
| H37Rv_KO_Rv1272 | -0.309 | -0.773 |
| H37Rv_KO_SugABC | 1.375 | -1.335 |
| H37Rv_KO_MbtN | -0.726 | -1.826 |
| Trans05 | -0.094 | -2.563 |
| macrophage_unactivated | 0.369 | -0.347 |
| IL1 | -0.184 | 1.385 |
| Rapamycin | 0.43 | 0.064 |
| Tcell | -0.081 | 0.821 |
| GMCSF | -0.668 | -0.055 |
| IFNab | 0.928 | 0.653 |
| IFNg | 0.345 | 0.673 |
| IFNg_GMCSF1 | 0.0 | 0.503 |
| Rv1432_day32 | -2.066 | -0.322 |
| Rv1565c_day32 | -0.019 | 0.924 |
| secA2_input | 1.259 | 0.0 |
| delta_Rv3594 | 0.468 | 1.825 |
| delta_Rv3717 | 0.229 | 1.538 |
| delta_Rv3811 | 1.245 | 2.066 |
| delta_Rv0954 | 0.791 | 2.374 |
| PonA1 | 1.332 | 3.382 |
| EccD1_KO | -1.214 | -1.184 |
| EspI_KO | -1.198 | -0.054 |
| PE35_KO | -1.318 | 0.055 |
| PPE68_KO | -1.149 | -1.389 |
| glycerol2 | -0.9 | -1.345 |
| lignocerate | -0.821 | -1.729 |
| oleate | -1.978 | -0.519 |
| phosphatidylcholine | -0.99 | -1.62 |
| acetate | 0.0 | -2.613 |
| glucAc | 0.121 | -1.71 |
| Rv0950ko | 0.0 | -1.152 |
| Rv1096ko | 1.071 | 0.232 |
| Rv3684ko | -0.301 | -0.848 |
| delta_otsA_trehalose | 0.657 | -0.106 |