Top 10 genes with highest correlation to Rv3661/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0998/- | (cc=0.5508) | info on Rv0998/- |
| Rv1421/- | (cc=0.507) | info on Rv1421/- |
| Rv0392c/ndhA | (cc=0.4982) | info on Rv0392c/ndhA |
| Rv3707c/- | (cc=0.4874) | info on Rv3707c/- |
| Rv2691/ceoB | (cc=0.486) | info on Rv2691/ceoB |
| Rv2694c/- | (cc=0.4787) | info on Rv2694c/- |
| Rv3413c/- | (cc=0.4772) | info on Rv3413c/- |
| Rv3005c/- | (cc=0.4726) | info on Rv3005c/- |
| Rv2831/echA16 | (cc=0.4703) | info on Rv2831/echA16 |
| Rv3807c/- | (cc=0.4692) | info on Rv3807c/- |
Correlation of Rv3661/- with Rv2691/ceoB
Normalized LFCs for Rv3661/-:
(description and provenance of datasets)
| Rv3661/- | Rv2691/ceoB | |
| Fe_supp_jason_reseq | 1.727 | 1.026 |
| low_pH_jason_reseq | 0.612 | 0.301 |
| NO_jason_reseq | -0.995 | -6.0 |
| B6_jason_reseq | -0.881 | -0.992 |
| MHCII_jason_reseq | 1.179 | 0.56 |
| Isoniazid02 | 0.231 | 0.953 |
| Rifampicin4 | 0.609 | 2.477 |
| Ethambutol3 | 0.946 | 0.209 |
| Meropenem3 | 0.161 | 0.964 |
| Vancomycin16 | 0.804 | 3.672 |
| Rv2680_day32 | -1.908 | -1.619 |
| H37Rv_KO_MarP | -1.872 | -1.672 |
| hypoxia_3wks | 0.809 | -2.349 |
| hypoxia_6wks | 0.885 | 4.402 |
| glycerol | 0.815 | 0.209 |
| cholesterol | 0.931 | 3.009 |
| AJ | -0.938 | -1.192 |
| Bibs02 | 1.456 | 1.628 |
| Bibs02c | 1.475 | 1.776 |
| BL6 | 0.205 | 1.907 |
| BL6a | 0.865 | 1.669 |
| BXD01 | -0.383 | 0.387 |
| BXD010 | -0.556 | 1.006 |
| BXD011 | -1.201 | 0.961 |
| BXD03 | -1.413 | 1.239 |
| BXD04 | -0.735 | 0.952 |
| BXD05 | -1.001 | 1.251 |
| BXD06 | -0.52 | 1.068 |
| BXD07 | -0.014 | 0.844 |
| BXD08 | -0.746 | 0.119 |
| BXD09 | -0.568 | 0.349 |
| CAST | -1.76 | -1.855 |
| CCcont | 0.826 | 1.939 |
| DS01 | 1.53 | 3.181 |
| DS02 | 1.454 | 3.362 |
| DS04 | 0.994 | 2.67 |
| DS0c | 1.766 | 2.654 |
| GP01 | 0.877 | 0.557 |
| GP02 | 0.204 | -1.009 |
| GP0c | 0.359 | 1.216 |
| NOD | -1.113 | -1.041 |
| NZO | -1.221 | -3.12 |
| PWK | -1.309 | -1.007 |
| H37Rv_KO_CtpC | -0.657 | 1.214 |
| H37Rv_KO_CtpD | -0.091 | 0.975 |
| H37Rv_KO_Rv1272 | -0.309 | 1.065 |
| H37Rv_KO_SugABC | 1.375 | 1.343 |
| H37Rv_KO_MbtN | -0.726 | 2.285 |
| Trans05 | -0.094 | 1.547 |
| macrophage_unactivated | 0.369 | 1.215 |
| IL1 | -0.184 | -1.323 |
| Rapamycin | 0.43 | -0.681 |
| Tcell | -0.081 | 0.443 |
| GMCSF | -0.668 | -0.502 |
| IFNab | 0.928 | 1.164 |
| IFNg | 0.345 | -0.941 |
| IFNg_GMCSF1 | 0.0 | -2.055 |
| Rv1432_day32 | -2.066 | -1.536 |
| Rv1565c_day32 | -0.019 | 1.857 |
| secA2_input | 1.259 | -1.497 |
| delta_Rv3594 | 0.468 | 1.106 |
| delta_Rv3717 | 0.229 | 0.997 |
| delta_Rv3811 | 1.245 | 0.495 |
| delta_Rv0954 | 0.791 | -0.236 |
| PonA1 | 1.332 | -0.036 |
| EccD1_KO | -1.214 | 0.25 |
| EspI_KO | -1.198 | 0.499 |
| PE35_KO | -1.318 | 0.397 |
| PPE68_KO | -1.149 | 0.928 |
| glycerol2 | -0.9 | -0.929 |
| lignocerate | -0.821 | -1.128 |
| oleate | -1.978 | 0.301 |
| phosphatidylcholine | -0.99 | -1.297 |
| acetate | 0.0 | 0.123 |
| glucAc | 0.121 | 0.409 |
| Rv0950ko | 0.0 | -0.754 |
| Rv1096ko | 1.071 | 1.001 |
| Rv3684ko | -0.301 | -0.819 |
| delta_otsA_trehalose | 0.657 | 1.391 |