Top 10 genes with highest correlation to Rv3661/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0998/- | (cc=0.5508) | info on Rv0998/- |
| Rv1421/- | (cc=0.507) | info on Rv1421/- |
| Rv0392c/ndhA | (cc=0.4982) | info on Rv0392c/ndhA |
| Rv3707c/- | (cc=0.4874) | info on Rv3707c/- |
| Rv2691/ceoB | (cc=0.486) | info on Rv2691/ceoB |
| Rv2694c/- | (cc=0.4787) | info on Rv2694c/- |
| Rv3413c/- | (cc=0.4772) | info on Rv3413c/- |
| Rv3005c/- | (cc=0.4726) | info on Rv3005c/- |
| Rv2831/echA16 | (cc=0.4703) | info on Rv2831/echA16 |
| Rv3807c/- | (cc=0.4692) | info on Rv3807c/- |
Correlation of Rv3661/- with Rv0998/-
Normalized LFCs for Rv3661/-:
(description and provenance of datasets)
| Rv3661/- | Rv0998/- | |
| Fe_supp_jason_reseq | 1.727 | 3.157 |
| low_pH_jason_reseq | 0.612 | 0.231 |
| NO_jason_reseq | -0.995 | 0.0 |
| B6_jason_reseq | -0.881 | 0.153 |
| MHCII_jason_reseq | 1.179 | 0.0 |
| Isoniazid02 | 0.231 | -1.641 |
| Rifampicin4 | 0.609 | -0.68 |
| Ethambutol3 | 0.946 | 0.541 |
| Meropenem3 | 0.161 | 1.265 |
| Vancomycin16 | 0.804 | -0.889 |
| Rv2680_day32 | -1.908 | 0.0 |
| H37Rv_KO_MarP | -1.872 | -1.233 |
| hypoxia_3wks | 0.809 | 4.103 |
| hypoxia_6wks | 0.885 | -2.211 |
| glycerol | 0.815 | 4.299 |
| cholesterol | 0.931 | 2.403 |
| AJ | -0.938 | -1.425 |
| Bibs02 | 1.456 | 1.216 |
| Bibs02c | 1.475 | 2.004 |
| BL6 | 0.205 | -0.768 |
| BL6a | 0.865 | 0.762 |
| BXD01 | -0.383 | -0.8 |
| BXD010 | -0.556 | -0.787 |
| BXD011 | -1.201 | -0.655 |
| BXD03 | -1.413 | -0.831 |
| BXD04 | -0.735 | -0.76 |
| BXD05 | -1.001 | -0.457 |
| BXD06 | -0.52 | -0.82 |
| BXD07 | -0.014 | -0.851 |
| BXD08 | -0.746 | -0.817 |
| BXD09 | -0.568 | -0.863 |
| CAST | -1.76 | -0.782 |
| CCcont | 0.826 | 2.422 |
| DS01 | 1.53 | 2.421 |
| DS02 | 1.454 | 0.0 |
| DS04 | 0.994 | 1.903 |
| DS0c | 1.766 | 2.176 |
| GP01 | 0.877 | -0.607 |
| GP02 | 0.204 | -0.511 |
| GP0c | 0.359 | -0.799 |
| NOD | -1.113 | -0.591 |
| NZO | -1.221 | -1.225 |
| PWK | -1.309 | -1.205 |
| H37Rv_KO_CtpC | -0.657 | -0.552 |
| H37Rv_KO_CtpD | -0.091 | -0.43 |
| H37Rv_KO_Rv1272 | -0.309 | -0.725 |
| H37Rv_KO_SugABC | 1.375 | 0.254 |
| H37Rv_KO_MbtN | -0.726 | -0.127 |
| Trans05 | -0.094 | -0.672 |
| macrophage_unactivated | 0.369 | -0.884 |
| IL1 | -0.184 | -1.863 |
| Rapamycin | 0.43 | -1.927 |
| Tcell | -0.081 | -0.912 |
| GMCSF | -0.668 | -2.022 |
| IFNab | 0.928 | -0.547 |
| IFNg | 0.345 | -1.678 |
| IFNg_GMCSF1 | 0.0 | -2.407 |
| Rv1432_day32 | -2.066 | -0.343 |
| Rv1565c_day32 | -0.019 | 1.071 |
| secA2_input | 1.259 | 0.302 |
| delta_Rv3594 | 0.468 | 4.054 |
| delta_Rv3717 | 0.229 | 4.344 |
| delta_Rv3811 | 1.245 | 3.679 |
| delta_Rv0954 | 0.791 | 2.505 |
| PonA1 | 1.332 | 2.734 |
| EccD1_KO | -1.214 | -3.588 |
| EspI_KO | -1.198 | -1.711 |
| PE35_KO | -1.318 | -1.928 |
| PPE68_KO | -1.149 | -2.473 |
| glycerol2 | -0.9 | -4.482 |
| lignocerate | -0.821 | -4.062 |
| oleate | -1.978 | -4.73 |
| phosphatidylcholine | -0.99 | -4.143 |
| acetate | 0.0 | -0.023 |
| glucAc | 0.121 | 0.043 |
| Rv0950ko | 0.0 | -3.435 |
| Rv1096ko | 1.071 | -2.781 |
| Rv3684ko | -0.301 | -2.967 |
| delta_otsA_trehalose | 0.657 | -0.788 |