Top 10 genes with highest correlation to Rv3649/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3509c/ilvX | (cc=0.4849) | info on Rv3509c/ilvX |
| Rv2089c/pepE | (cc=0.4627) | info on Rv2089c/pepE |
| Rv2490c/PE_PGRS43 | (cc=0.4627) | info on Rv2490c/PE_PGRS43 |
| Rv1407/fmu | (cc=0.4553) | info on Rv1407/fmu |
| Rv2974c/- | (cc=0.4521) | info on Rv2974c/- |
| Rv1075c/- | (cc=0.4499) | info on Rv1075c/- |
| Rv1135c/PPE16 | (cc=0.4448) | info on Rv1135c/PPE16 |
| Rv0203/- | (cc=0.442) | info on Rv0203/- |
| Rv2340c/PE_PGRS39 | (cc=0.4406) | info on Rv2340c/PE_PGRS39 |
| Rv2585c/- | (cc=0.4399) | info on Rv2585c/- |
Correlation of Rv3649/- with Rv2490c/PE_PGRS43
Normalized LFCs for Rv3649/-:
(description and provenance of datasets)
| Rv3649/- | Rv2490c/PE_PGRS43 | |
| Fe_supp_jason_reseq | 0.332 | -0.684 |
| low_pH_jason_reseq | -0.527 | -0.584 |
| NO_jason_reseq | 0.286 | -0.084 |
| B6_jason_reseq | 1.045 | 0.242 |
| MHCII_jason_reseq | 1.194 | 1.054 |
| Isoniazid02 | 0.469 | 0.659 |
| Rifampicin4 | 1.243 | 0.439 |
| Ethambutol3 | 1.043 | 0.323 |
| Meropenem3 | 0.936 | 0.284 |
| Vancomycin16 | 0.95 | 0.22 |
| Rv2680_day32 | -0.617 | -0.203 |
| H37Rv_KO_MarP | -0.731 | 0.154 |
| hypoxia_3wks | 0.223 | -0.267 |
| hypoxia_6wks | 0.077 | -0.576 |
| glycerol | 0.426 | 1.437 |
| cholesterol | 0.791 | 0.837 |
| AJ | 0.035 | 0.489 |
| Bibs02 | 1.252 | 0.657 |
| Bibs02c | 0.621 | 0.327 |
| BL6 | 0.773 | -0.498 |
| BL6a | -0.032 | -0.319 |
| BXD01 | 0.387 | -0.435 |
| BXD010 | 0.588 | -0.72 |
| BXD011 | -0.082 | -0.716 |
| BXD03 | -0.204 | -0.513 |
| BXD04 | -0.039 | -0.369 |
| BXD05 | 0.041 | -0.248 |
| BXD06 | 0.041 | -0.75 |
| BXD07 | 0.042 | -0.794 |
| BXD08 | -0.13 | -0.648 |
| BXD09 | -0.29 | -0.729 |
| CAST | -0.265 | 0.255 |
| CCcont | 0.257 | -1.368 |
| DS01 | 0.672 | 0.205 |
| DS02 | 0.999 | -0.014 |
| DS04 | 1.148 | 0.679 |
| DS0c | 0.767 | -0.16 |
| GP01 | -0.204 | 0.013 |
| GP02 | -0.386 | 0.675 |
| GP0c | 0.503 | -0.2 |
| NOD | -0.107 | -0.329 |
| NZO | -0.095 | 0.051 |
| PWK | 0.119 | -0.065 |
| H37Rv_KO_CtpC | -1.203 | -0.95 |
| H37Rv_KO_CtpD | 0.0 | 0.314 |
| H37Rv_KO_Rv1272 | 0.146 | -0.471 |
| H37Rv_KO_SugABC | 0.117 | -0.19 |
| H37Rv_KO_MbtN | 0.42 | -0.027 |
| Trans05 | 0.52 | -0.133 |
| macrophage_unactivated | -0.537 | -1.092 |
| IL1 | 0.0 | -1.026 |
| Rapamycin | 0.0 | -0.301 |
| Tcell | 0.13 | -1.225 |
| GMCSF | 0.401 | 0.092 |
| IFNab | -0.06 | -1.23 |
| IFNg | -0.337 | -1.048 |
| IFNg_GMCSF1 | 0.305 | -0.189 |
| Rv1432_day32 | 0.329 | 0.025 |
| Rv1565c_day32 | -0.463 | 0.021 |
| secA2_input | -0.049 | 0.166 |
| delta_Rv3594 | 0.263 | 0.199 |
| delta_Rv3717 | 1.061 | 0.118 |
| delta_Rv3811 | 0.97 | -0.294 |
| delta_Rv0954 | 0.249 | -0.329 |
| PonA1 | 0.199 | -0.216 |
| EccD1_KO | 1.043 | 0.342 |
| EspI_KO | -0.148 | 0.026 |
| PE35_KO | 0.487 | 0.204 |
| PPE68_KO | 0.314 | 0.198 |
| glycerol2 | -0.321 | 0.07 |
| lignocerate | -0.363 | -0.129 |
| oleate | -0.027 | 0.373 |
| phosphatidylcholine | -0.258 | 0.308 |
| acetate | -0.271 | 0.216 |
| glucAc | 0.726 | 0.101 |
| Rv0950ko | 0.443 | 0.88 |
| Rv1096ko | 1.212 | 0.392 |
| Rv3684ko | 0.704 | 0.488 |
| delta_otsA_trehalose | -0.564 | -1.402 |