Top 10 genes with highest correlation to Rv3649/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3509c/ilvX | (cc=0.4849) | info on Rv3509c/ilvX |
| Rv2089c/pepE | (cc=0.4627) | info on Rv2089c/pepE |
| Rv2490c/PE_PGRS43 | (cc=0.4627) | info on Rv2490c/PE_PGRS43 |
| Rv1407/fmu | (cc=0.4553) | info on Rv1407/fmu |
| Rv2974c/- | (cc=0.4521) | info on Rv2974c/- |
| Rv1075c/- | (cc=0.4499) | info on Rv1075c/- |
| Rv1135c/PPE16 | (cc=0.4448) | info on Rv1135c/PPE16 |
| Rv0203/- | (cc=0.442) | info on Rv0203/- |
| Rv2340c/PE_PGRS39 | (cc=0.4406) | info on Rv2340c/PE_PGRS39 |
| Rv2585c/- | (cc=0.4399) | info on Rv2585c/- |
Correlation of Rv3649/- with Rv2089c/pepE
Normalized LFCs for Rv3649/-:
(description and provenance of datasets)
| Rv3649/- | Rv2089c/pepE | |
| Fe_supp_jason_reseq | 0.332 | 0.813 |
| low_pH_jason_reseq | -0.527 | -0.179 |
| NO_jason_reseq | 0.286 | 0.622 |
| B6_jason_reseq | 1.045 | 0.61 |
| MHCII_jason_reseq | 1.194 | 0.0 |
| Isoniazid02 | 0.469 | 0.973 |
| Rifampicin4 | 1.243 | 0.0 |
| Ethambutol3 | 1.043 | 3.413 |
| Meropenem3 | 0.936 | 2.671 |
| Vancomycin16 | 0.95 | 0.796 |
| Rv2680_day32 | -0.617 | -0.471 |
| H37Rv_KO_MarP | -0.731 | -0.785 |
| hypoxia_3wks | 0.223 | 0.136 |
| hypoxia_6wks | 0.077 | 0.702 |
| glycerol | 0.426 | -0.089 |
| cholesterol | 0.791 | 0.627 |
| AJ | 0.035 | 0.131 |
| Bibs02 | 1.252 | 0.51 |
| Bibs02c | 0.621 | 0.784 |
| BL6 | 0.773 | 0.589 |
| BL6a | -0.032 | -0.181 |
| BXD01 | 0.387 | -1.104 |
| BXD010 | 0.588 | -0.435 |
| BXD011 | -0.082 | -1.578 |
| BXD03 | -0.204 | -1.883 |
| BXD04 | -0.039 | -1.268 |
| BXD05 | 0.041 | -0.758 |
| BXD06 | 0.041 | -1.269 |
| BXD07 | 0.042 | -0.338 |
| BXD08 | -0.13 | -1.042 |
| BXD09 | -0.29 | -0.863 |
| CAST | -0.265 | 0.162 |
| CCcont | 0.257 | -0.997 |
| DS01 | 0.672 | 0.409 |
| DS02 | 0.999 | -0.065 |
| DS04 | 1.148 | -0.438 |
| DS0c | 0.767 | 0.506 |
| GP01 | -0.204 | -0.44 |
| GP02 | -0.386 | -1.364 |
| GP0c | 0.503 | -1.19 |
| NOD | -0.107 | 0.576 |
| NZO | -0.095 | 0.37 |
| PWK | 0.119 | 0.388 |
| H37Rv_KO_CtpC | -1.203 | -1.486 |
| H37Rv_KO_CtpD | 0.0 | 0.435 |
| H37Rv_KO_Rv1272 | 0.146 | -0.76 |
| H37Rv_KO_SugABC | 0.117 | 0.588 |
| H37Rv_KO_MbtN | 0.42 | -1.38 |
| Trans05 | 0.52 | -0.183 |
| macrophage_unactivated | -0.537 | -0.641 |
| IL1 | 0.0 | -0.217 |
| Rapamycin | 0.0 | -1.249 |
| Tcell | 0.13 | -1.03 |
| GMCSF | 0.401 | 0.0 |
| IFNab | -0.06 | -0.296 |
| IFNg | -0.337 | -0.262 |
| IFNg_GMCSF1 | 0.305 | -0.553 |
| Rv1432_day32 | 0.329 | -0.24 |
| Rv1565c_day32 | -0.463 | 0.496 |
| secA2_input | -0.049 | 1.188 |
| delta_Rv3594 | 0.263 | 1.634 |
| delta_Rv3717 | 1.061 | 0.594 |
| delta_Rv3811 | 0.97 | 1.866 |
| delta_Rv0954 | 0.249 | 0.0 |
| PonA1 | 0.199 | 0.728 |
| EccD1_KO | 1.043 | 0.51 |
| EspI_KO | -0.148 | 1.343 |
| PE35_KO | 0.487 | 0.621 |
| PPE68_KO | 0.314 | 1.731 |
| glycerol2 | -0.321 | -1.131 |
| lignocerate | -0.363 | -1.047 |
| oleate | -0.027 | -0.872 |
| phosphatidylcholine | -0.258 | -0.798 |
| acetate | -0.271 | -0.487 |
| glucAc | 0.726 | -0.229 |
| Rv0950ko | 0.443 | -0.347 |
| Rv1096ko | 1.212 | -0.259 |
| Rv3684ko | 0.704 | -0.282 |
| delta_otsA_trehalose | -0.564 | -1.358 |