Top 10 genes with highest correlation to Rv3643/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0008c/- | (cc=0.633) | info on Rv0008c/- |
| Rv1045/- | (cc=0.6289) | info on Rv1045/- |
| Rv0089/- | (cc=0.587) | info on Rv0089/- |
| Rv1834/lipZ | (cc=0.5426) | info on Rv1834/lipZ |
| Rv3353c/- | (cc=0.5401) | info on Rv3353c/- |
| Rv2323c/- | (cc=0.5341) | info on Rv2323c/- |
| Rv3295/- | (cc=0.534) | info on Rv3295/- |
| Rv2638/- | (cc=0.5289) | info on Rv2638/- |
| Rv3059/cyp136 | (cc=0.5163) | info on Rv3059/cyp136 |
| Rv3294c/- | (cc=0.5147) | info on Rv3294c/- |
Correlation of Rv3643/- with Rv3353c/-
Normalized LFCs for Rv3643/-:
(description and provenance of datasets)
| Rv3643/- | Rv3353c/- | |
| Fe_supp_jason_reseq | 0.011 | -0.717 |
| low_pH_jason_reseq | -0.612 | -0.11 |
| NO_jason_reseq | -0.378 | -0.278 |
| B6_jason_reseq | -0.87 | 0.221 |
| MHCII_jason_reseq | 0.147 | 1.201 |
| Isoniazid02 | -0.013 | -0.202 |
| Rifampicin4 | -0.988 | -0.376 |
| Ethambutol3 | -0.124 | -0.405 |
| Meropenem3 | -0.145 | -0.026 |
| Vancomycin16 | -1.093 | 0.172 |
| Rv2680_day32 | 0.824 | -1.07 |
| H37Rv_KO_MarP | 0.23 | 0.638 |
| hypoxia_3wks | -0.821 | -0.478 |
| hypoxia_6wks | 0.288 | -1.063 |
| glycerol | -2.424 | 0.846 |
| cholesterol | -0.858 | 0.675 |
| AJ | -0.602 | 0.62 |
| Bibs02 | -0.06 | 0.603 |
| Bibs02c | -0.508 | -0.582 |
| BL6 | -0.906 | -0.568 |
| BL6a | -1.884 | -0.494 |
| BXD01 | -3.35 | -1.238 |
| BXD010 | -2.188 | -2.853 |
| BXD011 | -1.273 | -0.857 |
| BXD03 | -1.597 | -0.144 |
| BXD04 | -1.46 | -1.562 |
| BXD05 | -2.02 | -1.466 |
| BXD06 | -1.867 | -1.137 |
| BXD07 | -2.116 | -1.715 |
| BXD08 | -1.962 | -1.122 |
| BXD09 | -2.596 | -1.577 |
| CAST | 0.502 | 0.127 |
| CCcont | -1.763 | -0.098 |
| DS01 | -0.517 | -0.137 |
| DS02 | -1.66 | -0.471 |
| DS04 | -0.72 | 0.793 |
| DS0c | -0.825 | -0.572 |
| GP01 | 0.899 | -0.708 |
| GP02 | -0.635 | 0.932 |
| GP0c | -0.893 | -2.083 |
| NOD | 0.913 | 0.848 |
| NZO | -0.228 | 0.533 |
| PWK | -0.051 | 0.443 |
| H37Rv_KO_CtpC | 0.743 | 0.684 |
| H37Rv_KO_CtpD | 0.584 | 0.211 |
| H37Rv_KO_Rv1272 | 0.129 | -0.093 |
| H37Rv_KO_SugABC | -0.668 | -2.271 |
| H37Rv_KO_MbtN | -0.577 | -1.938 |
| Trans05 | 0.645 | -0.616 |
| macrophage_unactivated | -1.521 | -1.218 |
| IL1 | -1.43 | -3.1 |
| Rapamycin | -1.043 | -1.553 |
| Tcell | -1.571 | -1.548 |
| GMCSF | -1.761 | -1.45 |
| IFNab | -0.698 | -3.205 |
| IFNg | -2.534 | -4.196 |
| IFNg_GMCSF1 | -1.515 | -0.591 |
| Rv1432_day32 | -0.249 | 0.0 |
| Rv1565c_day32 | 0.878 | -0.504 |
| secA2_input | -2.052 | -0.712 |
| delta_Rv3594 | -1.049 | -0.595 |
| delta_Rv3717 | -0.557 | 0.132 |
| delta_Rv3811 | -1.518 | 0.8 |
| delta_Rv0954 | 0.013 | 1.271 |
| PonA1 | 0.419 | 1.024 |
| EccD1_KO | -1.437 | 0.358 |
| EspI_KO | -2.125 | -0.471 |
| PE35_KO | -0.904 | -0.866 |
| PPE68_KO | -0.928 | -0.682 |
| glycerol2 | 0.369 | 2.969 |
| lignocerate | 1.303 | 3.989 |
| oleate | 0.196 | -1.691 |
| phosphatidylcholine | 0.531 | 2.968 |
| acetate | 2.635 | 3.361 |
| glucAc | 0.792 | 2.601 |
| Rv0950ko | -0.292 | -0.826 |
| Rv1096ko | -0.639 | 0.905 |
| Rv3684ko | -0.485 | 2.112 |
| delta_otsA_trehalose | 1.977 | -0.27 |