TnSeqCorr

Top 10 genes with highest correlation to Rv3643/-:

update plotcorrelationlink to info on gene
Rv0008c/- (cc=0.633) info on Rv0008c/-
Rv1045/- (cc=0.6289) info on Rv1045/-
Rv0089/- (cc=0.587) info on Rv0089/-
Rv1834/lipZ (cc=0.5426) info on Rv1834/lipZ
Rv3353c/- (cc=0.5401) info on Rv3353c/-
Rv2323c/- (cc=0.5341) info on Rv2323c/-
Rv3295/- (cc=0.534) info on Rv3295/-
Rv2638/- (cc=0.5289) info on Rv2638/-
Rv3059/cyp136 (cc=0.5163) info on Rv3059/cyp136
Rv3294c/- (cc=0.5147) info on Rv3294c/-

Correlation of Rv3643/- with Rv0089/-

Normalized LFCs for Rv3643/-:
(description and provenance of datasets)
Rv3643/-Rv0089/-
Fe_supp_jason_reseq

0.011

-0.617

low_pH_jason_reseq

-0.612

-0.221

NO_jason_reseq

-0.378

0.047

B6_jason_reseq

-0.87

0.241

MHCII_jason_reseq

0.147

0.487

Isoniazid02

-0.013

0.877

Rifampicin4

-0.988

-0.701

Ethambutol3

-0.124

-0.483

Meropenem3

-0.145

-0.564

Vancomycin16

-1.093

0.0

Rv2680_day32

0.824

1.554

H37Rv_KO_MarP

0.23

1.943

hypoxia_3wks

-0.821

-0.59

hypoxia_6wks

0.288

-0.699

glycerol

-2.424

-1.188

cholesterol

-0.858

-0.61

AJ

-0.602

0.069

Bibs02

-0.06

0.098

Bibs02c

-0.508

0.0

BL6

-0.906

-1.724

BL6a

-1.884

-1.411

BXD01

-3.35

-1.681

BXD010

-2.188

-1.478

BXD011

-1.273

-1.727

BXD03

-1.597

-1.397

BXD04

-1.46

-0.973

BXD05

-2.02

-1.529

BXD06

-1.867

-1.642

BXD07

-2.116

-2.006

BXD08

-1.962

-2.382

BXD09

-2.596

-1.596

CAST

0.502

0.492

CCcont

-1.763

-0.977

DS01

-0.517

-0.209

DS02

-1.66

0.153

DS04

-0.72

0.462

DS0c

-0.825

0.308

GP01

0.899

0.326

GP02

-0.635

-1.336

GP0c

-0.893

-0.489

NOD

0.913

0.145

NZO

-0.228

-0.1

PWK

-0.051

0.389

H37Rv_KO_CtpC

0.743

-1.138

H37Rv_KO_CtpD

0.584

-3.064

H37Rv_KO_Rv1272

0.129

-0.742

H37Rv_KO_SugABC

-0.668

-0.481

H37Rv_KO_MbtN

-0.577

-1.571

Trans05

0.645

0.008

macrophage_unactivated

-1.521

-2.727

IL1

-1.43

-1.246

Rapamycin

-1.043

-2.071

Tcell

-1.571

-1.3

GMCSF

-1.761

-1.848

IFNab

-0.698

-2.524

IFNg

-2.534

-1.871

IFNg_GMCSF1

-1.515

-0.936

Rv1432_day32

-0.249

0.301

Rv1565c_day32

0.878

0.594

secA2_input

-2.052

-1.028

delta_Rv3594

-1.049

0.0

delta_Rv3717

-0.557

-0.216

delta_Rv3811

-1.518

0.755

delta_Rv0954

0.013

0.442

PonA1

0.419

-0.308

EccD1_KO

-1.437

-0.118

EspI_KO

-2.125

1.221

PE35_KO

-0.904

0.204

PPE68_KO

-0.928

1.497

glycerol2

0.369

1.494

lignocerate

1.303

1.736

oleate

0.196

-0.505

phosphatidylcholine

0.531

1.304

acetate

2.635

2.168

glucAc

0.792

1.508

Rv0950ko

-0.292

-0.169

Rv1096ko

-0.639

0.983

Rv3684ko

-0.485

1.019

delta_otsA_trehalose

1.977

1.304