Top 10 genes with highest correlation to Rv3643/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0008c/- | (cc=0.633) | info on Rv0008c/- |
| Rv1045/- | (cc=0.6289) | info on Rv1045/- |
| Rv0089/- | (cc=0.587) | info on Rv0089/- |
| Rv1834/lipZ | (cc=0.5426) | info on Rv1834/lipZ |
| Rv3353c/- | (cc=0.5401) | info on Rv3353c/- |
| Rv2323c/- | (cc=0.5341) | info on Rv2323c/- |
| Rv3295/- | (cc=0.534) | info on Rv3295/- |
| Rv2638/- | (cc=0.5289) | info on Rv2638/- |
| Rv3059/cyp136 | (cc=0.5163) | info on Rv3059/cyp136 |
| Rv3294c/- | (cc=0.5147) | info on Rv3294c/- |
Correlation of Rv3643/- with Rv0008c/-
Normalized LFCs for Rv3643/-:
(description and provenance of datasets)
| Rv3643/- | Rv0008c/- | |
| Fe_supp_jason_reseq | 0.011 | -2.052 |
| low_pH_jason_reseq | -0.612 | -0.85 |
| NO_jason_reseq | -0.378 | 1.575 |
| B6_jason_reseq | -0.87 | 2.298 |
| MHCII_jason_reseq | 0.147 | 1.965 |
| Isoniazid02 | -0.013 | 0.56 |
| Rifampicin4 | -0.988 | 0.412 |
| Ethambutol3 | -0.124 | 0.27 |
| Meropenem3 | -0.145 | -0.231 |
| Vancomycin16 | -1.093 | 0.979 |
| Rv2680_day32 | 0.824 | 0.0 |
| H37Rv_KO_MarP | 0.23 | 0.113 |
| hypoxia_3wks | -0.821 | -0.702 |
| hypoxia_6wks | 0.288 | -0.1 |
| glycerol | -2.424 | 0.856 |
| cholesterol | -0.858 | 0.366 |
| AJ | -0.602 | 0.449 |
| Bibs02 | -0.06 | 1.347 |
| Bibs02c | -0.508 | -0.973 |
| BL6 | -0.906 | -0.648 |
| BL6a | -1.884 | -3.221 |
| BXD01 | -3.35 | -1.653 |
| BXD010 | -2.188 | -2.357 |
| BXD011 | -1.273 | -2.539 |
| BXD03 | -1.597 | -1.169 |
| BXD04 | -1.46 | -3.059 |
| BXD05 | -2.02 | -0.609 |
| BXD06 | -1.867 | -1.85 |
| BXD07 | -2.116 | -1.757 |
| BXD08 | -1.962 | -1.279 |
| BXD09 | -2.596 | -1.863 |
| CAST | 0.502 | 0.349 |
| CCcont | -1.763 | -0.603 |
| DS01 | -0.517 | 0.186 |
| DS02 | -1.66 | -0.263 |
| DS04 | -0.72 | 1.214 |
| DS0c | -0.825 | -0.955 |
| GP01 | 0.899 | 0.797 |
| GP02 | -0.635 | -0.164 |
| GP0c | -0.893 | 1.374 |
| NOD | 0.913 | 0.762 |
| NZO | -0.228 | -0.241 |
| PWK | -0.051 | 0.965 |
| H37Rv_KO_CtpC | 0.743 | -0.258 |
| H37Rv_KO_CtpD | 0.584 | 1.101 |
| H37Rv_KO_Rv1272 | 0.129 | 0.282 |
| H37Rv_KO_SugABC | -0.668 | 0.062 |
| H37Rv_KO_MbtN | -0.577 | -1.337 |
| Trans05 | 0.645 | -1.893 |
| macrophage_unactivated | -1.521 | -0.83 |
| IL1 | -1.43 | -1.978 |
| Rapamycin | -1.043 | -0.43 |
| Tcell | -1.571 | -2.923 |
| GMCSF | -1.761 | -1.993 |
| IFNab | -0.698 | -2.283 |
| IFNg | -2.534 | -3.127 |
| IFNg_GMCSF1 | -1.515 | -1.034 |
| Rv1432_day32 | -0.249 | 0.755 |
| Rv1565c_day32 | 0.878 | 0.0 |
| secA2_input | -2.052 | -2.232 |
| delta_Rv3594 | -1.049 | 0.601 |
| delta_Rv3717 | -0.557 | 1.058 |
| delta_Rv3811 | -1.518 | -1.393 |
| delta_Rv0954 | 0.013 | -0.368 |
| PonA1 | 0.419 | 0.12 |
| EccD1_KO | -1.437 | -0.362 |
| EspI_KO | -2.125 | -0.893 |
| PE35_KO | -0.904 | -0.248 |
| PPE68_KO | -0.928 | 0.362 |
| glycerol2 | 0.369 | 2.742 |
| lignocerate | 1.303 | 3.004 |
| oleate | 0.196 | 0.788 |
| phosphatidylcholine | 0.531 | 2.22 |
| acetate | 2.635 | 4.201 |
| glucAc | 0.792 | 2.715 |
| Rv0950ko | -0.292 | 1.158 |
| Rv1096ko | -0.639 | 1.583 |
| Rv3684ko | -0.485 | 2.103 |
| delta_otsA_trehalose | 1.977 | 0.711 |