TnSeqCorr

Top 10 genes with highest correlation to Rv3578/arsB2:

update plotcorrelationlink to info on gene
Rv1163/narJ (cc=0.4573) info on Rv1163/narJ
Rv3440c/- (cc=0.4366) info on Rv3440c/-
Rv2974c/- (cc=0.4006) info on Rv2974c/-
Rv3788/- (cc=0.3927) info on Rv3788/-
Rv3507/PE_PGRS53 (cc=0.3839) info on Rv3507/PE_PGRS53
Rv3122/- (cc=0.379) info on Rv3122/-
Rv3450c/eccB4 (cc=0.3768) info on Rv3450c/eccB4
Rv1452c/PE_PGRS28 (cc=0.3731) info on Rv1452c/PE_PGRS28
Rv1660/pks10 (cc=0.3716) info on Rv1660/pks10
Rv0764c/cyp51 (cc=0.36) info on Rv0764c/cyp51

Correlation of Rv3578/arsB2 with Rv3788/-

Normalized LFCs for Rv3578/arsB2:
(description and provenance of datasets)
Rv3578/arsB2Rv3788/-
Fe_supp_jason_reseq

0.107

-0.401

low_pH_jason_reseq

-0.497

-0.823

NO_jason_reseq

-0.533

-0.685

B6_jason_reseq

-0.472

-1.016

MHCII_jason_reseq

0.182

0.244

Isoniazid02

0.32

0.227

Rifampicin4

0.788

-0.439

Ethambutol3

0.247

0.056

Meropenem3

0.193

-0.158

Vancomycin16

0.669

-1.451

Rv2680_day32

-0.206

-0.326

H37Rv_KO_MarP

0.061

0.111

hypoxia_3wks

0.853

-0.259

hypoxia_6wks

0.687

-0.263

glycerol

1.056

0.81

cholesterol

0.987

0.463

AJ

0.466

0.898

Bibs02

1.282

0.069

Bibs02c

0.547

0.17

BL6

0.187

0.246

BL6a

0.228

-0.839

BXD01

0.009

-0.732

BXD010

-0.081

-0.592

BXD011

-0.393

-0.781

BXD03

0.041

-0.992

BXD04

0.233

-0.7

BXD05

-0.118

-0.088

BXD06

-0.151

-0.275

BXD07

-0.305

-0.627

BXD08

0.171

-0.877

BXD09

-0.159

-0.579

CAST

0.219

0.35

CCcont

0.045

-0.215

DS01

0.383

-0.051

DS02

-0.227

0.573

DS04

0.073

-0.625

DS0c

0.644

-0.02

GP01

0.134

-0.665

GP02

0.687

-1.084

GP0c

0.176

-0.608

NOD

0.877

1.378

NZO

0.546

0.676

PWK

-0.172

0.318

H37Rv_KO_CtpC

0.858

0.737

H37Rv_KO_CtpD

1.208

0.672

H37Rv_KO_Rv1272

0.256

-1.091

H37Rv_KO_SugABC

0.457

-2.448

H37Rv_KO_MbtN

-1.044

-0.968

Trans05

-0.652

-0.334

macrophage_unactivated

0.489

-0.685

IL1

0.107

-0.314

Rapamycin

0.451

-0.126

Tcell

-0.121

-0.925

GMCSF

0.048

-0.415

IFNab

0.109

-0.381

IFNg

0.142

0.0

IFNg_GMCSF1

-0.295

-0.952

Rv1432_day32

0.486

0.738

Rv1565c_day32

0.336

-0.472

secA2_input

0.454

1.594

delta_Rv3594

0.46

-0.462

delta_Rv3717

-0.04

-0.344

delta_Rv3811

0.708

-0.143

delta_Rv0954

0.322

-0.836

PonA1

0.024

0.507

EccD1_KO

-0.168

-0.888

EspI_KO

-0.145

-1.124

PE35_KO

-0.274

-0.613

PPE68_KO

-0.445

-1.357

glycerol2

0.318

-0.2

lignocerate

0.265

0.186

oleate

0.411

0.02

phosphatidylcholine

0.615

0.253

acetate

0.018

-0.575

glucAc

-0.033

-0.549

Rv0950ko

-0.226

0.516

Rv1096ko

-0.084

-0.241

Rv3684ko

0.029

-0.452

delta_otsA_trehalose

0.095

0.734