Top 10 genes with highest correlation to Rv3575c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2851c/- | (cc=0.5889) | info on Rv2851c/- |
| Rv2852c/mqo | (cc=0.4928) | info on Rv2852c/mqo |
| Rv0826/- | (cc=0.4461) | info on Rv0826/- |
| Rv3135/PPE50 | (cc=0.4348) | info on Rv3135/PPE50 |
| Rv3570c/hsaA | (cc=0.432) | info on Rv3570c/hsaA |
| Rv3272/- | (cc=0.4199) | info on Rv3272/- |
| Rv0624/vapC30 | (cc=0.4181) | info on Rv0624/vapC30 |
| Rv3549c/- | (cc=0.4108) | info on Rv3549c/- |
| Rv3687c/rsfB | (cc=0.4065) | info on Rv3687c/rsfB |
| Rv0491/regX3 | (cc=0.4045) | info on Rv0491/regX3 |
Correlation of Rv3575c/- with Rv3135/PPE50
Normalized LFCs for Rv3575c/-:
(description and provenance of datasets)
| Rv3575c/- | Rv3135/PPE50 | |
| Fe_supp_jason_reseq | 0.079 | 0.688 |
| low_pH_jason_reseq | -1.128 | 0.174 |
| NO_jason_reseq | 0.331 | 2.801 |
| B6_jason_reseq | 0.737 | 2.183 |
| MHCII_jason_reseq | -0.495 | 1.116 |
| Isoniazid02 | -0.256 | 3.336 |
| Rifampicin4 | -1.053 | -2.285 |
| Ethambutol3 | 0.223 | 1.802 |
| Meropenem3 | 0.199 | 3.717 |
| Vancomycin16 | -1.207 | -2.995 |
| Rv2680_day32 | 1.286 | 2.964 |
| H37Rv_KO_MarP | 0.638 | 1.094 |
| hypoxia_3wks | 1.695 | 0.562 |
| hypoxia_6wks | 0.902 | -1.061 |
| glycerol | -0.657 | -4.007 |
| cholesterol | -2.09 | -5.184 |
| AJ | -0.363 | -2.508 |
| Bibs02 | -0.554 | -1.37 |
| Bibs02c | -0.209 | -1.193 |
| BL6 | -0.204 | -3.041 |
| BL6a | -1.155 | -1.129 |
| BXD01 | 0.688 | -1.012 |
| BXD010 | -0.331 | -0.585 |
| BXD011 | 0.305 | -0.534 |
| BXD03 | -0.247 | -2.318 |
| BXD04 | 0.806 | 0.107 |
| BXD05 | 0.008 | -0.724 |
| BXD06 | -0.326 | -0.534 |
| BXD07 | 0.068 | -1.596 |
| BXD08 | 1.018 | -0.665 |
| BXD09 | 0.484 | -1.041 |
| CAST | -2.167 | -1.864 |
| CCcont | -1.041 | -1.868 |
| DS01 | -0.447 | -2.247 |
| DS02 | 1.345 | -0.487 |
| DS04 | -0.278 | -2.562 |
| DS0c | -0.5 | -1.138 |
| GP01 | -0.123 | -4.382 |
| GP02 | -0.227 | -3.217 |
| GP0c | -0.059 | -5.348 |
| NOD | -1.516 | -1.914 |
| NZO | 1.706 | -0.813 |
| PWK | -1.388 | -1.82 |
| H37Rv_KO_CtpC | -0.528 | -0.453 |
| H37Rv_KO_CtpD | -0.679 | 0.28 |
| H37Rv_KO_Rv1272 | -0.406 | -2.059 |
| H37Rv_KO_SugABC | 0.1 | -1.424 |
| H37Rv_KO_MbtN | -0.434 | -2.371 |
| Trans05 | 0.979 | -1.383 |
| macrophage_unactivated | -0.593 | -2.209 |
| IL1 | 1.652 | -0.715 |
| Rapamycin | 0.758 | -1.163 |
| Tcell | 0.964 | 1.137 |
| GMCSF | 0.269 | -0.853 |
| IFNab | -0.568 | -1.769 |
| IFNg | 3.017 | 0.623 |
| IFNg_GMCSF1 | 2.533 | -0.217 |
| Rv1432_day32 | 2.677 | 2.57 |
| Rv1565c_day32 | -1.579 | -2.088 |
| secA2_input | 0.171 | -1.736 |
| delta_Rv3594 | 0.526 | -1.065 |
| delta_Rv3717 | 1.122 | -1.501 |
| delta_Rv3811 | 0.772 | -1.205 |
| delta_Rv0954 | 0.328 | -1.047 |
| PonA1 | -1.287 | -1.091 |
| EccD1_KO | -0.036 | -2.937 |
| EspI_KO | 0.063 | -2.033 |
| PE35_KO | 0.064 | -1.61 |
| PPE68_KO | 0.07 | -1.465 |
| glycerol2 | 1.152 | 1.188 |
| lignocerate | 0.04 | -1.594 |
| oleate | 0.047 | 1.752 |
| phosphatidylcholine | 0.657 | 0.045 |
| acetate | -0.672 | -0.72 |
| glucAc | -0.536 | -1.299 |
| Rv0950ko | 0.691 | 0.024 |
| Rv1096ko | 1.445 | -1.342 |
| Rv3684ko | 1.67 | 0.671 |
| delta_otsA_trehalose | 1.192 | -2.409 |