Top 10 genes with highest correlation to Rv3550/echA20:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3502c/- | (cc=0.7494) | info on Rv3502c/- |
| Rv3559c/- | (cc=0.7432) | info on Rv3559c/- |
| Rv0485/- | (cc=0.74) | info on Rv0485/- |
| Rv3540c/ltp2 | (cc=0.7398) | info on Rv3540c/ltp2 |
| Rv3551/- | (cc=0.7329) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.7042) | info on Rv3544c/fadE28 |
| Rv3535c/hsaG | (cc=0.7016) | info on Rv3535c/hsaG |
| Rv1568/bioA | (cc=0.6947) | info on Rv1568/bioA |
| Rv1590/- | (cc=0.693) | info on Rv1590/- |
| Rv3870/eccCa1 | (cc=0.689) | info on Rv3870/eccCa1 |
Correlation of Rv3550/echA20 with Rv3502c/-
Normalized LFCs for Rv3550/echA20:
(description and provenance of datasets)
| Rv3550/echA20 | Rv3502c/- | |
| Fe_supp_jason_reseq | -0.227 | -0.336 |
| low_pH_jason_reseq | 0.862 | -1.28 |
| NO_jason_reseq | 1.134 | -0.016 |
| B6_jason_reseq | -2.946 | -3.524 |
| MHCII_jason_reseq | -2.595 | -3.922 |
| Isoniazid02 | 0.477 | -2.007 |
| Rifampicin4 | -0.084 | 0.669 |
| Ethambutol3 | -0.568 | -1.852 |
| Meropenem3 | -0.835 | -1.668 |
| Vancomycin16 | 0.236 | -0.525 |
| Rv2680_day32 | -1.353 | -2.581 |
| H37Rv_KO_MarP | -0.684 | 0.508 |
| hypoxia_3wks | -0.929 | -0.714 |
| hypoxia_6wks | -1.455 | -0.687 |
| glycerol | 1.289 | 0.69 |
| cholesterol | -2.021 | -3.872 |
| AJ | -1.439 | -4.212 |
| Bibs02 | -2.551 | -4.722 |
| Bibs02c | -2.919 | -5.065 |
| BL6 | -1.745 | -2.7 |
| BL6a | -2.566 | -4.653 |
| BXD01 | -1.265 | -2.668 |
| BXD010 | -1.435 | -3.551 |
| BXD011 | -1.535 | -0.815 |
| BXD03 | -0.382 | -1.315 |
| BXD04 | -1.49 | -1.429 |
| BXD05 | -1.405 | -2.501 |
| BXD06 | -1.729 | -2.961 |
| BXD07 | -1.345 | -3.253 |
| BXD08 | -1.118 | -1.451 |
| BXD09 | -1.181 | -3.117 |
| CAST | -2.404 | -3.824 |
| CCcont | 0.739 | -0.174 |
| DS01 | -3.295 | -4.965 |
| DS02 | -0.321 | -3.316 |
| DS04 | -2.513 | -3.781 |
| DS0c | -2.264 | -5.251 |
| GP01 | -0.83 | -1.835 |
| GP02 | -1.078 | -1.846 |
| GP0c | 0.23 | -0.039 |
| NOD | -1.627 | -2.804 |
| NZO | -2.783 | -2.861 |
| PWK | -2.541 | -3.645 |
| H37Rv_KO_CtpC | -2.266 | -3.507 |
| H37Rv_KO_CtpD | -1.322 | -2.53 |
| H37Rv_KO_Rv1272 | -1.968 | -2.502 |
| H37Rv_KO_SugABC | -1.283 | 0.205 |
| H37Rv_KO_MbtN | -1.438 | -1.675 |
| Trans05 | -0.685 | -2.747 |
| macrophage_unactivated | -0.549 | 0.407 |
| IL1 | 1.536 | -0.483 |
| Rapamycin | 2.645 | -0.844 |
| Tcell | -1.802 | -2.955 |
| GMCSF | 1.368 | 0.1 |
| IFNab | 2.207 | 1.787 |
| IFNg | 0.414 | 0.526 |
| IFNg_GMCSF1 | -0.211 | 0.349 |
| Rv1432_day32 | 0.0 | -1.936 |
| Rv1565c_day32 | -2.246 | -5.231 |
| secA2_input | -0.759 | -0.125 |
| delta_Rv3594 | 1.839 | 0.104 |
| delta_Rv3717 | 2.848 | 0.113 |
| delta_Rv3811 | 2.208 | 0.291 |
| delta_Rv0954 | 4.117 | 0.253 |
| PonA1 | 3.064 | -0.246 |
| EccD1_KO | 1.365 | -0.585 |
| EspI_KO | -1.132 | -0.376 |
| PE35_KO | 0.228 | -1.018 |
| PPE68_KO | 0.71 | -0.886 |
| glycerol2 | 1.487 | -0.593 |
| lignocerate | 2.377 | 0.084 |
| oleate | -1.704 | -1.195 |
| phosphatidylcholine | 1.648 | -0.683 |
| acetate | 2.803 | -0.652 |
| glucAc | 2.347 | 0.216 |
| Rv0950ko | -0.498 | 0.09 |
| Rv1096ko | 0.85 | 0.03 |
| Rv3684ko | 0.249 | 0.098 |
| delta_otsA_trehalose | -0.557 | -0.09 |