Top 10 genes with highest correlation to Rv3549c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3502c/- | (cc=0.684) | info on Rv3502c/- |
| Rv3560c/fadE30 | (cc=0.6632) | info on Rv3560c/fadE30 |
| Rv3568c/hsaC | (cc=0.6477) | info on Rv3568c/hsaC |
| Rv3569c/hsaD | (cc=0.6174) | info on Rv3569c/hsaD |
| Rv0390/- | (cc=0.6065) | info on Rv0390/- |
| Rv3542c/- | (cc=0.6015) | info on Rv3542c/- |
| Rv3544c/fadE28 | (cc=0.592) | info on Rv3544c/fadE28 |
| Rv3553/- | (cc=0.5896) | info on Rv3553/- |
| Rv3494c/mce4F | (cc=0.589) | info on Rv3494c/mce4F |
| Rv3540c/ltp2 | (cc=0.5865) | info on Rv3540c/ltp2 |
Correlation of Rv3549c/- with Rv3540c/ltp2
Normalized LFCs for Rv3549c/-:
(description and provenance of datasets)
| Rv3549c/- | Rv3540c/ltp2 | |
| Fe_supp_jason_reseq | -1.26 | -0.218 |
| low_pH_jason_reseq | 2.25 | 0.979 |
| NO_jason_reseq | 0.866 | -0.176 |
| B6_jason_reseq | -0.837 | -2.219 |
| MHCII_jason_reseq | -3.049 | -1.719 |
| Isoniazid02 | -0.447 | 2.103 |
| Rifampicin4 | -1.703 | -0.171 |
| Ethambutol3 | 1.058 | 2.831 |
| Meropenem3 | -0.649 | -0.236 |
| Vancomycin16 | -0.281 | -0.618 |
| Rv2680_day32 | -0.852 | 0.0 |
| H37Rv_KO_MarP | -0.484 | -0.169 |
| hypoxia_3wks | -0.754 | -0.132 |
| hypoxia_6wks | -0.779 | -0.069 |
| glycerol | 1.008 | 1.065 |
| cholesterol | -3.148 | -1.761 |
| AJ | -2.005 | -2.82 |
| Bibs02 | -3.331 | -2.223 |
| Bibs02c | -3.66 | -1.97 |
| BL6 | -1.24 | -0.752 |
| BL6a | -2.174 | -2.03 |
| BXD01 | -0.813 | -1.227 |
| BXD010 | -0.385 | -1.107 |
| BXD011 | -0.858 | -0.042 |
| BXD03 | -0.209 | 0.417 |
| BXD04 | 0.411 | -1.38 |
| BXD05 | -2.452 | -1.38 |
| BXD06 | -1.323 | -1.623 |
| BXD07 | -1.197 | -1.197 |
| BXD08 | -0.572 | -1.363 |
| BXD09 | -0.662 | -1.44 |
| CAST | -2.132 | -2.571 |
| CCcont | -0.765 | 0.757 |
| DS01 | -3.302 | -2.871 |
| DS02 | -0.058 | -2.644 |
| DS04 | -1.036 | -1.989 |
| DS0c | -0.614 | -2.637 |
| GP01 | -1.539 | -1.102 |
| GP02 | -1.65 | -0.929 |
| GP0c | 0.432 | 0.785 |
| NOD | -1.103 | -1.351 |
| NZO | -0.67 | -2.425 |
| PWK | -1.526 | -2.384 |
| H37Rv_KO_CtpC | -2.842 | -1.813 |
| H37Rv_KO_CtpD | -2.216 | -1.095 |
| H37Rv_KO_Rv1272 | 0.877 | -1.022 |
| H37Rv_KO_SugABC | 1.692 | -1.106 |
| H37Rv_KO_MbtN | -1.253 | -1.056 |
| Trans05 | -0.242 | -0.512 |
| macrophage_unactivated | -1.146 | -0.83 |
| IL1 | -0.243 | -0.451 |
| Rapamycin | -0.522 | 0.0 |
| Tcell | -0.411 | -3.584 |
| GMCSF | -0.449 | 0.246 |
| IFNab | 0.236 | 2.316 |
| IFNg | 0.208 | 1.013 |
| IFNg_GMCSF1 | 0.698 | -1.405 |
| Rv1432_day32 | -0.18 | -0.18 |
| Rv1565c_day32 | -3.172 | -0.766 |
| secA2_input | -0.476 | 1.249 |
| delta_Rv3594 | 0.584 | -0.225 |
| delta_Rv3717 | 0.457 | 0.37 |
| delta_Rv3811 | 0.626 | 0.437 |
| delta_Rv0954 | -0.174 | 0.652 |
| PonA1 | -0.223 | 0.693 |
| EccD1_KO | 0.98 | 0.635 |
| EspI_KO | 1.115 | 0.918 |
| PE35_KO | 0.394 | 0.292 |
| PPE68_KO | 0.637 | 0.32 |
| glycerol2 | -0.08 | 1.292 |
| lignocerate | 0.161 | 1.628 |
| oleate | -1.126 | -1.117 |
| phosphatidylcholine | -0.48 | 0.854 |
| acetate | -0.095 | 2.068 |
| glucAc | 0.485 | 2.286 |
| Rv0950ko | 0.85 | 0.093 |
| Rv1096ko | 1.737 | 1.3 |
| Rv3684ko | 0.924 | 0.845 |
| delta_otsA_trehalose | 0.823 | 0.327 |